pycom14g02070

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
1622549 .. 1623191
643 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGTCTCCGACTTGGGGATCTATGGTGTTACTTTTGACGGACCTTGGTTATGGAGAAAGTGACCCTAATCCAAAGCGAACGGTGAAAAGCAGGGCTACAGATATAGAGGAACTGGCTGACCAATTGGATTTAGGACACAGATTTTATGTAATTGGTTTCTCCATAGGTGGACAGGTGATTTGGAGCTGCTTCAAGTTCATCCCTCACAGGATCGCTGGAGCAGCACTATTAGCACCCGTGGTTAACTATTGGTGGACTGGTATTCCAGCAAATCTATCCAGTCAAGCTTACTCCCAACAGCTTCTGCAAGACCAATGGGCAGTTTGTGTGTCGCACTACACCCCTTGGCTTACCTACTTTTGGAACACTCAAAAATGGTTTCCCGGTTCAAGTATTCTGGCTCACGGTAGAGATTGTCTTTCTGACCAATACAAAAGAACTTATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

6.88

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 15 - 99 3e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 25, 218
AfiI CCNNNNNNNGG 2 cut(s) 14, 360
AgsI TTSAA 2 cut(s) 193, 390
AluBI AGCT 3 cut(s) 186, 287, 301
AluI AGCT 3 cut(s) 186, 287, 301
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 25, 218
AlwNI CAGNNNCTG 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 186, 221
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 94, 187
AvaII GGWCC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 173, 233
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 187, 222
BlsI GCNGC 2 cut(s) 188, 223
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 43, 237, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 360
Bse1I ACTGG 3 cut(s) 117, 262, 279
BseDI CCNNGG 3 cut(s) 43, 237, 344
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 14, 360
BseNI ACTGG 3 cut(s) 117, 262, 279
BseXI GCAGC 2 cut(s) 173, 233
BsiSI CCGG 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 14, 360
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 17, 210
BspPI GGATC 2 cut(s) 25, 218
BsrI ACTGG 3 cut(s) 117, 262, 279
BssECI CCNNGG 3 cut(s) 43, 237, 344
BssMI GATC 2 cut(s) 17, 210
BssT1I CCWWGG 2 cut(s) 43, 344
Bst4CI ACNGT 2 cut(s) 82, 407
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 2 cut(s) 20, 213
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 17, 210
BstMWI GCNNNNNNNGC 2 cut(s) 221, 230
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 173, 233
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 40
CviJI RGCY 7 cut(s) 95, 116, 186, 287, 301, 349, 401
CviKI_1 RGCY 7 cut(s) 95, 116, 186, 287, 301, 349, 401
DpnI GATC 2 cut(s) 19, 212
DpnII GATC 2 cut(s) 17, 210
Eco130I CCWWGG 2 cut(s) 43, 344
Eco47I GGWCC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 43, 344
ErhI CCWWGG 2 cut(s) 43, 344
FaiI YATR 6 cut(s) 23, 51, 104, 147, 164, 444
Fnu4HI GCNGC 2 cut(s) 187, 222
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 187, 222
GluI GCNGC 2 cut(s) 187, 222
GsuI CTGGAG 1 cut(s) 237
HapII CCGG 1 cut(s) 384
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 285
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 384
HphI GGTGA 2 cut(s) 94, 187
Hpy166II GTNNAC 3 cut(s) 170, 244, 255
Hpy188I TCNGA 2 cut(s) 9, 424
Hpy8I GTNNAC 3 cut(s) 170, 244, 255
HpyCH4III ACNGT 2 cut(s) 82, 407
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 230
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 17, 210
LmnI GCTCC 2 cut(s) 183, 218
Lsp1109I GCAGC 2 cut(s) 173, 233
MaeIII GTNAC 2 cut(s) 27, 59
MalI GATC 2 cut(s) 19, 212
MboI GATC 2 cut(s) 17, 210
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 17
MluCI AATT 2 cut(s) 122, 150
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 2 cut(s) 100, 213
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 221, 230
NciI CCSGG 1 cut(s) 384
NdeII GATC 2 cut(s) 17, 210
NmuCI GTSAC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 188, 223
PspPI GGNCC 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 17
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 2 cut(s) 187, 222
Sau3AI GATC 2 cut(s) 17, 210
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 384
SetI ASST 8 cut(s) 45, 169, 177, 188, 289, 303, 356, 449
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 40
Sse9I AATT 2 cut(s) 122, 150
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 43, 344
TaaI ACNGT 2 cut(s) 82, 407
TasI AATT 2 cut(s) 122, 150
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 186, 221
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.