pycom14g02170

mitochondrial electron transport, ubiquinol to cytochrome c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
1686350 .. 1687997
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGCGTTCCAACCAAAGAAAACCCAAAAGAAAAGAAATTCTTAAGCCCACTATTGGTGGAACATGGACCAACACTTCGAAGCCCACAAAACCCCCGTCCAAACGACCCAGGCCGAACCACTCGAATACTCTAGCGGACCGTTCCAAACAACCCGGTTCGCAAATCCAAACGCCATATCACAGGACCCAAATCCCGTTCCCATTTCCACGACGCGAGAGTTCTGAACAAAATCTTCCACCTCGCAGCTCAGATCAGAAGCAGGCGGAAACAGATTCGCGCAGATCGCCATGGATTCAGCGGCTCGAAGGAGCGGCGGAGGCCTCTTCGAAGGTTTATACAGGGTCATCATGCGACGTAACTCCGTCTACGTCACCTTTGTCATCGCTGGAGCCTTCCTCGGCGAGCGGGCTGTTGATTACGGAGTTCATAAGCTGTGGGAGTACAATAATGTTGGGAAACGATATGAAGATATTTCAGTTCTGGGGACAAGGCAATCTGAAGAATGAGATTACAGATGCTTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008121 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016021 GO:0016043 GO:0016310 GO:0016491 GO:0016679 GO:0016681 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04144 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04144 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

176

Amino Acids

19.43

Weight (kDa)

10.01

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 311, 405
AccI GTMKAC 1 cut(s) 365
AccII CGCG 2 cut(s) 213, 277
AciI CCGC 6 cut(s) 134, 263, 298, 311, 314, 405
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 41
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 2 cut(s) 246, 432
AluI AGCT 2 cut(s) 246, 432
AoxI GGCC 2 cut(s) 110, 318
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 4 cut(s) 58, 80, 90, 112
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 66, 136, 183
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 363
AsuII TTCGAA 2 cut(s) 77, 326
AvaII GGWCC 3 cut(s) 66, 136, 183
BbvI GCAGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 244, 299, 312
BlsI GCNGC 3 cut(s) 245, 300, 313
Bme1390I CCNGG 2 cut(s) 109, 153
Bme18I GGWCC 3 cut(s) 66, 136, 183
BmgT120I GGNCC 3 cut(s) 66, 136, 183
BmiI GGNNCC 2 cut(s) 185, 390
BmrFI CCNGG 2 cut(s) 109, 153
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 407
Bpu14I TTCGAA 2 cut(s) 77, 326
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 107, 287, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 3 cut(s) 107, 287, 396
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 213, 277
BshFI GGCC 2 cut(s) 112, 320
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 2 cut(s) 112, 320
Bsp119I TTCGAA 2 cut(s) 77, 326
Bsp143I GATC 2 cut(s) 250, 281
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 6 cut(s) 134, 263, 298, 311, 314, 405
BspANI GGCC 2 cut(s) 112, 320
BspCNI CTCAG 1 cut(s) 260
BspFNI CGCG 2 cut(s) 213, 277
BspLI GGNNCC 2 cut(s) 185, 390
BspT104I TTCGAA 2 cut(s) 77, 326
BspTI CTTAAG 1 cut(s) 41
BsrBI CCGCTC 2 cut(s) 311, 405
BssECI CCNNGG 3 cut(s) 107, 287, 396
BssMI GATC 2 cut(s) 250, 281
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 41
BstBI TTCGAA 2 cut(s) 77, 326
BstC8I GCNNGC 3 cut(s) 261, 403, 407
BstDEI CTNAG 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 287
BstFNI CGCG 2 cut(s) 213, 277
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 253, 284
BstMBI GATC 2 cut(s) 250, 281
BstMWI GCNNNNNNNGC 2 cut(s) 283, 317
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 107, 151
BstUI CGCG 2 cut(s) 213, 277
BstV1I GCAGC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 112, 320
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 261, 403, 407
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 3 cut(s) 66, 136, 183
CpoI CGGWCCG 1 cut(s) 136
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 441
CspI CGGWCCG 1 cut(s) 136
CviAII CATG 3 cut(s) 63, 288, 348
CviJI RGCY 9 cut(s) 46, 82, 112, 246, 301, 320, 391, 409, 432
CviKI_1 RGCY 9 cut(s) 46, 82, 112, 246, 301, 320, 391, 409, 432
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 1 cut(s) 247
DpnI GATC 2 cut(s) 252, 283
DpnII GATC 2 cut(s) 250, 281
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
EciI GGCGGA 2 cut(s) 278, 329
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 320
Eco47I GGWCC 3 cut(s) 66, 136, 183
Eco57I CTGAAG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 3 cut(s) 66, 291, 351
FaiI YATR 7 cut(s) 64, 175, 289, 336, 349, 428, 464
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 498
FatI CATG 3 cut(s) 62, 287, 347
FauI CCCGC 1 cut(s) 398
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 3 cut(s) 244, 299, 312
Fsp4HI GCNGC 3 cut(s) 244, 299, 312
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 244, 299, 312
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 112, 320
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 66, 291, 351
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 272, 292
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 4 cut(s) 223, 250, 255, 498
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 2 cut(s) 213, 356
HpyAV CCTTC 3 cut(s) 299, 322, 402
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 354, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 317
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 2 cut(s) 354, 368
Hsp92II CATG 3 cut(s) 66, 291, 351
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 250, 281
LmnI GCTCC 2 cut(s) 308, 388
LpnPI CCDG 8 cut(s) 94, 121, 166, 166, 245, 324, 371, 466
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 354, 368
MaeIII GTNAC 2 cut(s) 355, 369
MalI GATC 2 cut(s) 252, 283
MbiI CCGCTC 2 cut(s) 311, 405
MboI GATC 2 cut(s) 250, 281
MboII GAAGA 4 cut(s) 224, 315, 478, 511
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 249, 310, 331, 406
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 298
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 109, 153
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 2 cut(s) 213, 277
MwoI GCNNNNNNNGC 2 cut(s) 283, 317
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 287
NdeII GATC 2 cut(s) 250, 281
NlaIII CATG 3 cut(s) 66, 291, 351
NlaIV GGNNCC 2 cut(s) 185, 390
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 369
NspV TTCGAA 2 cut(s) 77, 326
PceI AGGCCT 1 cut(s) 320
PfeI GAWTC 2 cut(s) 272, 292
PkrI GCNGC 3 cut(s) 245, 300, 313
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 185, 390
PspPI GGNCC 3 cut(s) 66, 136, 183
PspPPI RGGWCCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 3 cut(s) 244, 299, 312
Sau3AI GATC 2 cut(s) 250, 281
Sau96I GGNCC 3 cut(s) 66, 136, 183
ScrFI CCNGG 2 cut(s) 109, 153
SetI ASST 7 cut(s) 241, 248, 333, 357, 371, 376, 434
SfaNI GCATC 1 cut(s) 505
SfuI TTCGAA 2 cut(s) 77, 326
SinI GGWCC 3 cut(s) 66, 136, 183
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 6 cut(s) 134, 263, 298, 311, 314, 405
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 107, 151
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 357, 371
TaqI TCGA 4 cut(s) 77, 122, 303, 326
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 440
TauI GCSGC 2 cut(s) 301, 314
TfiI GAWTC 2 cut(s) 272, 292
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 2 cut(s) 415, 479
TspGWI ACGGA 2 cut(s) 351, 434
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 66, 136, 183
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.