pycom14g02610
ERF Family

4'-phosphopantetheinyl transferase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
2002863 .. 2003377
515 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGATTTTATTCAGACGCAGACCATTTCACAGAATGAACATTCATGCCCTCCATAGCAATTTCTGCTCTCTGCTCTCTGTTCAACTTCCGTCTCGAATGGAAAGTCATTTGTGGTATGTTTTGCCTGGGGAGGTGAAGAGTGAGGGCCTTTTGAATCGGTATTTCGAGCTTCTGTCACCGTCTGAGAGAGATAATGTTTTGGGCATGCGTGGGATTGAGCTCCAGAAAAGAGCATTGCTTGCCCGGGCATTGGTTCGGACTACGATTTCTAGATATATCAGACAAACGATCGAGTTGATCCGAGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 map00770
Pfam Domains
Protein Families
ACPS

Protein Analysis

104

Amino Acids

12.17

Weight (kDa)

10.76

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 292, 299
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 83, 154
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 2 cut(s) 169, 220
AluI AGCT 2 cut(s) 169, 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 2 cut(s) 292, 299
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 2 cut(s) 244, 245
AsuHPI GGTGA 2 cut(s) 145, 168
AvaI CYCGRG 1 cut(s) 243
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 2 cut(s) 244, 245
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 126, 244, 245
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 3 cut(s) 126, 244, 245
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 2 cut(s) 244, 245
BsaJI CCNNGG 2 cut(s) 125, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 125, 243
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 288, 297, 304
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 292, 299
BsrDI GCAATG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 125, 243
BssMI GATC 3 cut(s) 288, 297, 304
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 2 cut(s) 63, 239
BstC8I GCNNGC 2 cut(s) 206, 240
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 3 cut(s) 291, 300, 307
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 3 cut(s) 288, 297, 304
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 63, 239
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 124, 242, 243
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 206, 240
Cfr13I GGNCC 1 cut(s) 145
Cfr9I CCCGGG 1 cut(s) 243
CseI GACGC 1 cut(s) 24
CviAII CATG 2 cut(s) 44, 205
CviJI RGCY 3 cut(s) 147, 169, 220
CviKI_1 RGCY 3 cut(s) 147, 169, 220
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 290, 299, 306
DpnII GATC 3 cut(s) 288, 297, 304
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 2 cut(s) 47, 208
FaiI YATR 5 cut(s) 45, 54, 117, 206, 276
FatI CATG 2 cut(s) 43, 204
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 24
Hin1II CATG 2 cut(s) 47, 208
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 244
HphI GGTGA 2 cut(s) 145, 168
Hpy188I TCNGA 5 cut(s) 14, 184, 258, 281, 302
Hpy188III TCNNGA 3 cut(s) 93, 223, 270
HpyCH4III ACNGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 239
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 47, 208
Kzo9I GATC 3 cut(s) 288, 297, 304
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 111, 138, 236, 257
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 174
MalI GATC 3 cut(s) 290, 299, 306
MboI GATC 3 cut(s) 288, 297, 304
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 58
MnlI CCTC 3 cut(s) 59, 124, 136
MseI TTAA 1 cut(s) 310
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 3 cut(s) 126, 244, 245
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 63, 239
NciI CCSGG 2 cut(s) 244, 245
NdeII GATC 3 cut(s) 288, 297, 304
NlaIII CATG 2 cut(s) 47, 208
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 154
Ple19I CGATCG 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 304
PvuI CGATCG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 310
Sau3AI GATC 3 cut(s) 288, 297, 304
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 126, 244, 245
SduI GDGCHC 1 cut(s) 222
SetI ASST 3 cut(s) 135, 171, 222
SmaI CCCGGG 1 cut(s) 245
SphI GCATGC 1 cut(s) 208
SrfI GCCCGGGC 1 cut(s) 245
Sse9I AATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 124, 242, 243
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 94, 165, 291
TasI AATT 1 cut(s) 58
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 32, 50
TspGWI ACGGA 1 cut(s) 78
TspMI CCCGGG 1 cut(s) 243
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 243
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.