pycom14g03490

deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
2921422 .. 2922693
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGCAACAGTCCGCATGATAGATATAGCCGTCAACTTCACAGATGGAATGTTCAGAGAAATCTACAATGGAAAGCAGTGCCATGTCTCGGATATAGCCACGGTTTTGAGCAGGGCTTGGACTGCCGGCGTCGACCGGATTATCCAAGGCTTTTGTGTACTGTTGGTGTGCACCCCACTAGATGCAAGAGTGGGGATCCAGATAAGCATTTTCAGGCGCTTCTGTTATTGGCCAAAGAGGGCATTGAGAAAGGAAAGGTGTGCCCCGTACCCAAGATCTCTATGTCAGGAGGAACATGAGGCGTGCATTATAGGGTTTCAAGTCATTAAAACTTCTTTGAACGAGTGGTCTGTTCAGATATTGATATCATGCAGCAATATATTTTGTATTGCTTATTTCGTTCTCTTTTGTGCTTGGAAGGTGGTTGCAATTGGTGAATGTGGACTGGACTACGACGGGCTTCAGTTTTGCCCAGCAGAGATTCAAAAGAAGTACATCGTTTCTGAAAAAGTAGTTTTTTTCTTATTCTCTGTTTCCACTTGCACGCTTCTACTTTTCATTTTATTACATGATACATTCTGTCTTTTCCATCTTATACTCTATTGTGAACTCCAGGTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

208

Amino Acids

23.79

Weight (kDa)

7.42

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 190, 203
AcoI YGGCCR 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 159, 269, 494
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 320, 340, 485
AjnI CCWGG 1 cut(s) 612
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 91
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 2 cut(s) 190, 203
AoxI GGCC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 2 cut(s) 173, 265
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 38, 597
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 220
BglII AGATCT 1 cut(s) 275
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 614
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 99, 145
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 99, 145
BseLI CCNNNNNNNGG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 450
BseSI GKGCMC 2 cut(s) 173, 265
BseXI GCAGC 1 cut(s) 384
BseYI CCCAGC 1 cut(s) 472
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 126, 136
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 173, 265
Bsp143I GATC 2 cut(s) 195, 275
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 99, 145
BssMI GATC 2 cut(s) 195, 275
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 10, 103, 162
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 127, 304, 545
BstDSI CCRYGG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 2 cut(s) 198, 278
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 195, 275
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 612
BstSLI GKGCMC 2 cut(s) 173, 265
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 195, 275
BstYI RGATCY 2 cut(s) 195, 275
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 127, 304, 545
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 125
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 158, 268, 493
CviAII CATG 5 cut(s) 16, 83, 296, 369, 569
CviJI RGCY 6 cut(s) 29, 98, 116, 150, 232, 460
CviKI_1 RGCY 6 cut(s) 29, 98, 116, 150, 232, 460
CviQI GTAC 3 cut(s) 158, 268, 493
DpnI GATC 2 cut(s) 197, 277
DpnII GATC 2 cut(s) 195, 275
EaeI YGGCCR 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 145
Eco32I GATATC 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 612
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 5 cut(s) 19, 86, 299, 372, 572
FatI CATG 5 cut(s) 15, 82, 295, 368, 568
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 373
GsaI CCCAGC 1 cut(s) 476
GsuI CTGGAG 1 cut(s) 596
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 126, 136
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 5 cut(s) 19, 86, 299, 372, 572
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 2 cut(s) 34, 133
HindII GTYRAC 2 cut(s) 34, 133
HinfI GANTC 1 cut(s) 481
HpaII CCGG 2 cut(s) 126, 136
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 6 cut(s) 34, 133, 158, 171, 443, 608
Hpy188I TCNGA 5 cut(s) 56, 91, 357, 505, 623
Hpy188III TCNNGA 2 cut(s) 199, 287
Hpy8I GTNNAC 6 cut(s) 34, 133, 158, 171, 443, 608
Hpy99I CGWCG 2 cut(s) 134, 458
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 10, 103, 162
HpyCH4V TGCA 6 cut(s) 171, 185, 306, 372, 428, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 5 cut(s) 19, 86, 299, 372, 572
HspAI GCGC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 195, 275
LpnPI CCDG 9 cut(s) 97, 139, 149, 199, 212, 272, 431, 486, 599
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 179
MalI GATC 2 cut(s) 197, 277
MboI GATC 2 cut(s) 195, 275
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 195, 275
MhlI GDGCHC 2 cut(s) 173, 265
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 232
MnlI CCTC 3 cut(s) 231, 283, 292
Mox20I TGGCCA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 2 cut(s) 126, 136
MspR9I CCNGG 1 cut(s) 614
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 2 cut(s) 195, 275
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 5 cut(s) 19, 86, 299, 372, 572
NlaIV GGNNCC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 612
PspFI CCCAGC 1 cut(s) 472
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 2 cut(s) 195, 275
RsaI GTAC 3 cut(s) 159, 269, 494
RsaNI GTAC 3 cut(s) 158, 268, 493
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 2 cut(s) 195, 275
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 173, 265
SetI ASST 3 cut(s) 260, 423, 618
SfaNI GCATC 1 cut(s) 172
Sse9I AATT 1 cut(s) 429
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 10, 103, 162
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 429
TatI WGTACW 2 cut(s) 157, 492
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 547
TspRI CASTG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.