Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4820398 .. 4822705

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCCAACTACATGGGACAGATGGCTATAGCCATGAACAAGCTCTCCACGCTCGAGGGCTTCGTTAGACAGGCTGATAATCTGAGGCAGCAGACAATTCACCGGCTTCAACAAATTCTGACGACCCGTCAAGCAGCGAGGTGTTTGCTGGCAATCGCTGAGTACTTCCATCGTCTCCGAGCTCTCAGCTCTCTCTGGATGGGTCGTCCTCGACAAGATCAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

76

Amino Acids

8.72

Weight (kDa)

11.18

Isoelectric Point (pI)

70.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	114
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	126
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	43, 182, 189
AluI	AGCT	3 cut(s)	43, 182, 189
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	88, 134
ApoI	RAATTY	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	100, 146
BccI	CCATC	3 cut(s)	16, 177, 193
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	89, 135
BlsI	GCNGC	2 cut(s)	90, 136
BmcAI	AGTACT	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse118I	RCCGGY	1 cut(s)	102
BseGI	GGATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	74, 150, 199
BseXI	GCAGC	2 cut(s)	100, 146
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	75, 151, 198
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	83, 159, 185
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	100, 146
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	13, 34
CviJI	RGCY	9 cut(s)	5, 26, 32, 43, 60, 74, 106, 182, 189
CviKI_1	RGCY	9 cut(s)	5, 26, 32, 43, 60, 74, 106, 182, 189
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	83, 159, 185
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DriI	GACNNNNNGTC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	16, 37
FaiI	YATR	4 cut(s)	14, 29, 35, 226
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	2 cut(s)	12, 33
Fnu4HI	GCNGC	2 cut(s)	89, 135
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	89, 135
GluI	GCNGC	2 cut(s)	89, 135
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	16, 37
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	84, 120, 179
Hpy188III	TCNNGA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	83, 159, 185
Hsp92II	CATG	2 cut(s)	16, 37
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	56, 116, 134, 181
Lsp1109I	GCAGC	2 cut(s)	100, 146
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	96, 114
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	49, 78, 132, 219
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	16, 37
PaeR7I	CTCGAG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	90, 136
Psp124BI	GAGCTC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	53
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	89, 135
Sau3AI	GATC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	4 cut(s)	45, 143, 184, 191
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	96, 114
SstI	GAGCTC	1 cut(s)	184
TaqI	TCGA	2 cut(s)	54, 211
TasI	AATT	2 cut(s)	96, 114
TatI	WGTACW	1 cut(s)	162
TseI	GCWGC	2 cut(s)	88, 134
TspDTI	ATGAA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.