Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5439044 .. 5439825

Gene Structure 782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTTTGTAGCCATGCTGGGTTAGTTGAAAGGGGGCATTATTACTTTAGGCTCATGAAAGAGTATGGGATTGAGCCAGGTGAGCAGCATTACGCTACCCTGGTGGACTTGCTTTGCTGTGCTGGAAAATTGCAGGAAGCCGTTAAAATTATTGATGAAATGCCTATAGAACCAACAGAATCTATATGGGGAGCTTTATTAACGGGTTGTCGAATCCACGGTGACACTGAATTGGCAGCCTCTGTGGCTGACAGAGAAGATGCTAAGAGACCAAGTAATGAAGAAGGAAACGGGTTTGAGCTGGGAAACAAGATTCGCACATTCTCGGCTGGGGACAGGACTCACATGAGAACTAAAGAGATTTATGAGAAGTTGGAGGAGTTAGGGGAGGAAATGGAGAAAGCTGGTTATGTTGTAGACACAAGTTTCGTGCTAAGAGAAGTAAATCGCGAAGAGAAAGATCAGACAATTAGGTATCACGGTGAAAGACTAGCCATAGCGTTTGGTCTTATTACCTTTCCACCCGATAGACCCATTAGGATTATGAAGAACTTGCGTATTTGTGGCGATTGTCATATTGCAATCAAGTTTATGTCCAAGTGCTCAGGAAGGGTTATAATAGTGACGGATAACAACAGGTTTCATAGGTTTGAGGATGGAAAGTGCACGTGCGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

5.68

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	23 - 54	5e-07	PPR repeat
Eplus_motif	PF20430	107 - 132	9.2e-06	E+ motif
DYW_deaminase	PF14432	136 - 228	3.7e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	450
AciI	CCGC	1 cut(s)	672
AcvI	CACGTG	1 cut(s)	669
AgsI	TTSAA	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	76, 99
AluBI	AGCT	3 cut(s)	194, 301, 404
AluI	AGCT	3 cut(s)	194, 301, 404
Alw21I	GWGCWC	2 cut(s)	605, 668
Alw26I	GTCTC	1 cut(s)	262
Alw44I	GTGCAC	1 cut(s)	664
AlwNI	CAGNNNCTG	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	664
ApeKI	GCWGC	2 cut(s)	85, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AsuHPI	GGTGA	3 cut(s)	92, 233, 494
BaeGI	GKGCMC	1 cut(s)	668
BbrPI	CACGTG	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	605, 668
BbvI	GCAGC	2 cut(s)	97, 248
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	78, 101
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	86, 237
BlsI	GCNGC	2 cut(s)	87, 238
Bme1390I	CCNGG	2 cut(s)	78, 101
BmrFI	CCNGG	2 cut(s)	78, 101
BmsI	GCATC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	604
BsaAI	YACGTR	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	99, 217
BseBI	CCWGG	2 cut(s)	78, 101
BseDI	CCNNGG	2 cut(s)	99, 217
BseGI	GGATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	97, 248
BseYI	CCCAGC	3 cut(s)	17, 301, 329
Bsh1236I	CGCG	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	605, 668
BslFI	GGGAC	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	605, 668
Bsp143I	GATC	1 cut(s)	460
Bsp68I	TCGCGA	1 cut(s)	450
BspACI	CCGC	1 cut(s)	672
BspCNI	CTCAG	1 cut(s)	617
BspFNI	CGCG	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	99, 217
BssMI	GATC	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	78, 101
Bst4CI	ACNGT	2 cut(s)	221, 482
Bst6I	CTCTTC	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	264, 434, 604
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	450
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 245
BstNI	CCWGG	2 cut(s)	78, 101
BstSCI	CCNGG	2 cut(s)	76, 99
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	97, 248
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	225
BtuMI	TCGCGA	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	54
CviAII	CATG	3 cut(s)	14, 55, 346
DdeI	CTNAG	3 cut(s)	264, 434, 604
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	262
Eco72I	CACGTG	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	76, 99
FaeI	CATG	3 cut(s)	17, 58, 349
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	13, 54, 345
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	86, 237
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	86, 237
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	2 cut(s)	86, 237
GsaI	CCCAGC	3 cut(s)	21, 305, 333
Hin1II	CATG	3 cut(s)	17, 58, 349
HinfI	GANTC	4 cut(s)	179, 213, 313, 340
HphI	GGTGA	3 cut(s)	92, 233, 494
Hpy166II	GTNNAC	3 cut(s)	106, 418, 666
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	3 cut(s)	55, 449, 606
Hpy8I	GTNNAC	3 cut(s)	106, 418, 666
HpyAV	CCTTC	2 cut(s)	278, 603
HpyCH4III	ACNGT	2 cut(s)	221, 482
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	3 cut(s)	133, 581, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 245
HpyF3I	CTNAG	3 cut(s)	264, 434, 604
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	3 cut(s)	17, 58, 349
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	2 cut(s)	97, 248
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	2 cut(s)	221, 622
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	269, 293, 464, 559
MhlI	GDGCHC	2 cut(s)	605, 668
MluCI	AATT	4 cut(s)	128, 147, 230, 468
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	250, 370, 382, 646
MseI	TTAA	2 cut(s)	144, 200
MspR9I	CCNGG	2 cut(s)	78, 101
MvaI	CCWGG	2 cut(s)	78, 101
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	82, 245
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	17, 58, 349
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	221, 622
NruI	TCGCGA	1 cut(s)	450
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	179, 213, 313
PkrI	GCNGC	2 cut(s)	87, 238
PleI	GAGTC	1 cut(s)	334
PmaCI	CACGTG	1 cut(s)	669
PmlI	CACGTG	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	76, 99
PspCI	CACGTG	1 cut(s)	669
PspFI	CCCAGC	3 cut(s)	17, 301, 329
PspGI	CCWGG	2 cut(s)	76, 99
PstNI	CAGNNNCTG	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	144, 200
SatI	GCNGC	2 cut(s)	86, 237
Sau3AI	GATC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	78, 101
SduI	GDGCHC	2 cut(s)	605, 668
SetI	ASST	9 cut(s)	82, 196, 303, 406, 476, 518, 641, 650, 671
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	128, 147, 230, 468
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	76, 99
TaaI	ACNGT	2 cut(s)	221, 482
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	1 cut(s)	211
TasI	AATT	4 cut(s)	128, 147, 230, 468
TfiI	GAWTC	3 cut(s)	179, 213, 313
Tru1I	TTAA	2 cut(s)	144, 200
Tru9I	TTAA	2 cut(s)	144, 200
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	221, 622
TseI	GCWGC	2 cut(s)	85, 236
Tsp45I	GTSAC	2 cut(s)	221, 622
TspDTI	ATGAA	5 cut(s)	71, 171, 294, 560, 632
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.