Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5448860 .. 5449681

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTGCAATGGATCAGAGCGGATAAAACCCAATTCTTCTCCAGCGGCATCTCTTATATCTGTTGACGAAAGTAGACTCTCCAATACAGCCATGAATCACTTGACGGTTGAAACTGAAGATGCTTTTGCCAGCTTACTTGAGCTTGCTGCAAACAATGACATTCAGAGCTTCAAACGATCGATTGAGCATGACCCTTCTGGCATCGATGAGATTGGTTTGTGGTATTGTCGTCAGAAGGGCTCAAAACAGATGGTTAATGAGCAGAGAAGCCCTTTAATGGTTGCTGCTACATATGGTAGCATTGATGTCATGAAGCTAATTCTTTCTCTCTCTGATGCTGATGTGAACCAGGCCTGTGGGCGTGATAGGAGCACTGCTCTTCACTGTGCTGCCTCAGGTGGGGCTGAGAATGCCGTGGATTGTGTGAAGCTGCTTTTAGGAGCTGGTGCTGATCCTAATTCGGTTGATGCTAATGGTCATCATCCTATAGACGTTATAGTGGTTCCTCCTAGGCTACAAAATATCAAATTAGCTCTAGAAGAACTACTTATGATAAATGGTTCTGCTGGTGAACAAACTCTCACAGTGTCAACGAGAACTGTACATTCAAGTTCTCCTCCACTGTCAGCTTCCCCAGAAAATGGGTCTCCGTCCGCTTTTGATTTTAATTGTTCCCCTACAAAGTCGAAGTTCTATAATTCTCTCTCTTCGGCATCAGAGAAGAAGGAATATCCTGTTGATCCTTCTCTTCCAGACATCAAGAACAGCATTTATTCAACTGATGAGTTCCGAATGTATTCATTCAAGGTGAGGCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 zf-CCCH

Protein Analysis

274

Amino Acids

29.38

Weight (kDa)

5.17

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	82 - 156	2e-11	Ankyrin repeats (3 copies)
Ank	PF00023	124 - 156	3.3e-07	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	3 cut(s)	19, 44, 654
AclWI	GGATC	3 cut(s)	19, 446, 734
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	277, 399, 641
AgsI	TTSAA	5 cut(s)	110, 172, 609, 777, 805
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	8 cut(s)	132, 142, 168, 316, 430, 443, 533, 629
AluI	AGCT	8 cut(s)	132, 142, 168, 316, 430, 443, 533, 629
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	3 cut(s)	19, 446, 734
AoxI	GGCC	2 cut(s)	351, 812
ApeKI	GCWGC	4 cut(s)	146, 284, 389, 430
Asp700I	GAANNNNTTC	1 cut(s)	796
AspA2I	CCTAGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	581, 820
AvrII	CCTAGG	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	133, 271, 376, 417
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	2 cut(s)	510, 536
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	5 cut(s)	45, 147, 285, 390, 431
BlnI	CCTAGG	1 cut(s)	509
BlsI	GCNGC	5 cut(s)	46, 148, 286, 391, 432
Bme1390I	CCNGG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	6 cut(s)	56, 109, 210, 325, 457, 722
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	2 cut(s)	179, 204
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	414, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 399, 641
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	2 cut(s)	179, 204
BseDI	CCNNGG	2 cut(s)	414, 509
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	277, 399, 641
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	396, 408
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	133, 271, 376, 417
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	353, 814
BshVI	ATCGAT	2 cut(s)	179, 204
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	277, 399, 641
BsmAI	GTCTC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	353, 814
Bso31I	GGTCTC	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	242, 374
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	4 cut(s)	11, 176, 451, 739
BspACI	CCGC	3 cut(s)	19, 44, 654
BspANI	GGCC	2 cut(s)	353, 814
BspCNI	CTCAG	2 cut(s)	397, 407
BspDI	ATCGAT	2 cut(s)	179, 204
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	3 cut(s)	19, 446, 734
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	651
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	414, 509
BssMI	GATC	4 cut(s)	11, 176, 451, 739
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	5 cut(s)	106, 386, 586, 601, 624
Bst6I	CTCTTC	3 cut(s)	384, 712, 753
BstAUI	TGTACA	1 cut(s)	601
BstC8I	GCNNGC	2 cut(s)	130, 144
BstDEI	CTNAG	2 cut(s)	394, 405
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	4 cut(s)	14, 179, 454, 742
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	4 cut(s)	11, 176, 451, 739
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	4 cut(s)	133, 271, 376, 417
BstXI	CCANNNNNNTGG	1 cut(s)	356
Bsu15I	ATCGAT	2 cut(s)	179, 204
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	353, 814
BsuTUI	ATCGAT	2 cut(s)	179, 204
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	4 cut(s)	372, 382, 591, 620
Cac8I	GCNNGC	2 cut(s)	130, 144
CciI	TCATGA	1 cut(s)	309
ClaI	ATCGAT	2 cut(s)	179, 204
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	3 cut(s)	91, 188, 310
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	2 cut(s)	394, 405
DpnI	GATC	4 cut(s)	13, 178, 453, 741
DpnII	GATC	4 cut(s)	11, 176, 451, 739
Eam1104I	CTCTTC	3 cut(s)	384, 712, 753
EarI	CTCTTC	3 cut(s)	384, 712, 753
Eco130I	CCWWGG	1 cut(s)	509
Eco147I	AGGCCT	2 cut(s)	353, 814
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	3 cut(s)	94, 191, 313
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	3 cut(s)	90, 187, 309
FauNDI	CATATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	45, 147, 285, 390, 431
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	45, 147, 285, 390, 431
FspBI	CTAG	2 cut(s)	510, 536
GluI	GCNGC	5 cut(s)	45, 147, 285, 390, 431
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	353, 814
Hin1II	CATG	3 cut(s)	94, 191, 313
HincII	GTYRAC	2 cut(s)	64, 591
HindII	GTYRAC	2 cut(s)	64, 591
HinfI	GANTC	2 cut(s)	75, 94
HphI	GGTGA	2 cut(s)	581, 820
Hpy166II	GTNNAC	5 cut(s)	64, 74, 346, 572, 591
Hpy188I	TCNGA	6 cut(s)	16, 165, 234, 334, 718, 791
Hpy188III	TCNNGA	4 cut(s)	310, 536, 752, 760
Hpy8I	GTNNAC	5 cut(s)	64, 74, 346, 572, 591
HpyAV	CCTTC	4 cut(s)	204, 229, 718, 753
HpyCH4III	ACNGT	5 cut(s)	106, 386, 586, 601, 624
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	6, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	394, 405
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	94, 191, 313
Kzo9I	GATC	4 cut(s)	11, 176, 451, 739
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	369, 440
Lsp1109I	GCAGC	4 cut(s)	133, 271, 376, 417
LweI	GCATC	6 cut(s)	56, 109, 210, 325, 457, 722
MaeI	CTAG	2 cut(s)	510, 536
MaeII	ACGT	1 cut(s)	492
MalI	GATC	4 cut(s)	13, 178, 453, 741
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	4 cut(s)	11, 176, 451, 739
MboII	GAAGA	7 cut(s)	27, 128, 371, 551, 699, 733, 740
MhlI	GDGCHC	2 cut(s)	242, 374
MluCI	AATT	6 cut(s)	31, 318, 457, 527, 667, 697
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	403, 516, 627, 804
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	4 cut(s)	255, 275, 666, 820
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	4 cut(s)	11, 176, 451, 739
NlaIII	CATG	3 cut(s)	94, 191, 313
NlaIV	GGNNCC	1 cut(s)	504
PagI	TCATGA	1 cut(s)	309
PceI	AGGCCT	2 cut(s)	353, 814
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	641
PkrI	GCNGC	5 cut(s)	46, 148, 286, 391, 432
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	255, 275, 666, 820
SatI	GCNGC	5 cut(s)	45, 147, 285, 390, 431
Sau3AI	GATC	4 cut(s)	11, 176, 451, 739
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	242, 374
SfaNI	GCATC	6 cut(s)	56, 109, 210, 325, 457, 722
SfcI	CTRYAG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	6 cut(s)	31, 318, 457, 527, 667, 697
SseBI	AGGCCT	2 cut(s)	353, 814
SsiI	CCGC	3 cut(s)	19, 44, 654
SspMI	CTAG	2 cut(s)	510, 536
StuI	AGGCCT	2 cut(s)	353, 814
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	5 cut(s)	106, 386, 586, 601, 624
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	3 cut(s)	179, 204, 686
TasI	AATT	6 cut(s)	31, 318, 457, 527, 667, 697
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	4 cut(s)	255, 275, 666, 820
Tru9I	TTAA	4 cut(s)	255, 275, 666, 820
TscAI	CASTG	4 cut(s)	379, 389, 591, 627
TseI	GCWGC	4 cut(s)	146, 284, 389, 430
TspDTI	ATGAA	3 cut(s)	107, 326, 789
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	4 cut(s)	379, 389, 591, 627
Van91I	CCANNNNNTGG	1 cut(s)	641
XbaI	TCTAGA	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	2 cut(s)	510, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.