pycom14g06670

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
6669906 .. 6671164
1259 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGAGGGAATGTGAAGAAGTAATCTTGAATGATCCTTTCCTTGGAAAACGAGTAGAAGAAGGGAATTTCTCTACTGTACCACTGAGGGATGAGTTCCTTGAAAATGCTCGTTTATTTATCTTTGAGACATACTGTCGTATACATCAGCGCATTGACATGGGAGTGCTTGCAGAGAAATTAAACTTGAATTATGAGGAGGCTGAAAGATGGATTGTGAATCTAATTCGGAGCTCAAAGCTTGATGCGAAGATTGACTCGGAGTCAGGAACTGTTATCATGGAACCTAACCATCCGAATGTGTATGAGCAACTGATAGACCACACCAAGGCATTATCGGGGCGTACTTACAAGTTGGTTGGTCAGATCCTGGAACATGCTCAGGCACAGATTGCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.33

Weight (kDa)

5.24

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 1 - 94 1.2e-17 PCI domain
EIF3E_C PF21357 99 - 119 1.2e-07 Eukaryotic translation initiation factor 3 subunit E, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AclWI GGATC 2 cut(s) 26, 358
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 2 cut(s) 78, 343
AfiI CCNNNNNNNGG 2 cut(s) 41, 325
AgsI TTSAA 3 cut(s) 28, 101, 187
AhdI GACNNNNNGTC 2 cut(s) 132, 259
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 231, 238
AluI AGCT 2 cut(s) 231, 238
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 26, 358
AlwNI CAGNNNCTG 2 cut(s) 269, 367
ApoI RAATTY 1 cut(s) 64
AspLEI GCGC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BccI CCATC 2 cut(s) 201, 297
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 368
BmeRI GACNNNNNGTC 2 cut(s) 132, 259
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 40, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 325
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 40, 324
BseGI GGATG 2 cut(s) 94, 289
BseLI CCNNNNNNNGG 2 cut(s) 41, 325
BseMII CTCAG 2 cut(s) 74, 392
BseRI GAGGAG 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 41, 325
BsmAI GTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 31, 363
BspCNI CTCAG 2 cut(s) 75, 391
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 2 cut(s) 26, 358
BssECI CCNNGG 2 cut(s) 40, 324
BssMI GATC 2 cut(s) 31, 363
BssNAI GTATAC 1 cut(s) 140
BssT1I CCWWGG 2 cut(s) 40, 324
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 76, 134, 271
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 83, 378
BstF5I GGATG 2 cut(s) 94, 289
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 2 cut(s) 34, 366
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 31, 363
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZ17I GTATAC 1 cut(s) 140
BtsCI GGATG 2 cut(s) 94, 289
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 2 cut(s) 269, 367
CfoI GCGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 77, 342
CviAII CATG 3 cut(s) 157, 277, 374
CviJI RGCY 3 cut(s) 200, 231, 238
CviKI_1 RGCY 3 cut(s) 200, 231, 238
CviQI GTAC 2 cut(s) 77, 342
DdeI CTNAG 2 cut(s) 83, 378
DpnI GATC 2 cut(s) 33, 365
DpnII GATC 2 cut(s) 31, 363
DriI GACNNNNNGTC 2 cut(s) 132, 259
Eam1105I GACNNNNNGTC 2 cut(s) 132, 259
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 40, 324
Eco24I GRGCYC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 40, 324
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 40, 324
FaeI CATG 3 cut(s) 160, 280, 377
FaiI YATR 7 cut(s) 130, 140, 158, 192, 278, 303, 375
FatI CATG 3 cut(s) 156, 276, 373
FblI GTMKAC 1 cut(s) 139
FokI GGATG 2 cut(s) 101, 276
FriOI GRGCYC 1 cut(s) 233
GlaI GCGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 160, 280, 377
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 217, 254, 260
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 4 cut(s) 228, 259, 294, 363
Hpy188III TCNNGA 2 cut(s) 25, 264
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 3 cut(s) 76, 134, 271
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 83, 378
Hsp92II CATG 3 cut(s) 160, 280, 377
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 31, 363
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 249, 353, 365, 380
LweI GCATC 1 cut(s) 232
MalI GATC 2 cut(s) 33, 365
MboI GATC 2 cut(s) 31, 363
MboII GAAGA 3 cut(s) 26, 68, 259
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 4 cut(s) 64, 176, 187, 222
MlyI GAGTC 2 cut(s) 248, 269
MnlI CCTC 3 cut(s) 78, 187, 190
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 3 cut(s) 155, 161, 294
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 2 cut(s) 31, 363
NlaIII CATG 3 cut(s) 160, 280, 377
NlaIV GGNNCC 1 cut(s) 282
NspI RCATGY 1 cut(s) 377
PfeI GAWTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 366
PleI GAGTC 2 cut(s) 248, 268
PpsI GAGTC 2 cut(s) 248, 268
Psp124BI GAGCTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 282
PstNI CAGNNNCTG 2 cut(s) 269, 367
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 2 cut(s) 78, 343
RsaNI GTAC 2 cut(s) 77, 342
RseI CAYNNNNRTG 3 cut(s) 155, 161, 294
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 2 cut(s) 31, 363
SchI GAGTC 2 cut(s) 248, 269
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 233
SetI ASST 3 cut(s) 233, 240, 286
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 3 cut(s) 155, 161, 294
Sse9I AATT 4 cut(s) 64, 176, 187, 222
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 40, 324
TaaI ACNGT 3 cut(s) 76, 134, 271
TasI AATT 4 cut(s) 64, 176, 187, 222
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 87
TspRI CASTG 1 cut(s) 87
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.