Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6760993 .. 6761508

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCCGAAAGGAATATTGTTTCGTGGACGTCGATGGTTCGAGGGTACGTGCAAGAGGGTATGATTTCGGAGGCTGAATCACTTTTCTGGGAAATGCCTGAAAAGAATGTTGTTTCGTGGACAGTGATGTTGGGTGGCCTGATTCAAGAGGGTAGGATTGATGATGCCCGTAGGCTTTATGATATGATGCCTGACAAGGATGTCGTGGCAAGGACTAATATGATTGGTGGGTATTTTCAGGTTGGGCGTTTGGCTGAAGCACGTGAGATTTTTGATGAGATGCCGCGTAGGAATGTTGTTTCATGGACTATGATGGTATCTGGGTATGTGCATAACCAACAAGTAGATATTGCTAGAAAGCTTTTTGAAGTGATGCCAGAGAAAAATGAGGTGTCTTGGACAGCAATGCTGATAGGTTACACTCAGTGTGGACGGATCGATCCCCGGTTAGAACAGAGGCTTCAGAGCTTTTTAAAGCAATGCCTATTAAGTCAGTTGTTGCTTGTAATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 peroxidase

Protein Analysis

172

Amino Acids

19.89

Weight (kDa)

5.3

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 37	3.2e-06	PPR repeat family
PPR	PF01535	7 - 37	3.5e-09	PPR repeat
PPR_2	PF13041	35 - 67	2.4e-06	PPR repeat family
PPR_2	PF13041	66 - 99	3.1e-06	PPR repeat family
PPR	PF01535	72 - 99	8.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	32
AccII	CGCG	1 cut(s)	286
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	434, 443
AcuI	CTGAAG	2 cut(s)	276, 446
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	146, 368
AluBI	AGCT	2 cut(s)	361, 468
AluI	AGCT	2 cut(s)	361, 468
AlwI	GGATC	2 cut(s)	434, 443
AoxI	GGCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	445
BbrPI	CACGTG	1 cut(s)	263
BccI	CCATC	2 cut(s)	28, 307
BcnI	CCSGG	1 cut(s)	445
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	4 cut(s)	154, 177, 270, 363
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	2 cut(s)	49, 263
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	443
Bse3DI	GCAATG	2 cut(s)	411, 485
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	2 cut(s)	411, 485
BseMII	CTCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	445
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	435, 439
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	286
BspPI	GGATC	2 cut(s)	434, 443
BsrDI	GCAATG	2 cut(s)	411, 485
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	2 cut(s)	435, 439
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	2 cut(s)	49, 263
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	438, 442
BstMBI	GATC	2 cut(s)	435, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	129, 431
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	303, 513
CviJI	RGCY	7 cut(s)	74, 138, 175, 254, 361, 460, 468
CviKI_1	RGCY	7 cut(s)	74, 138, 175, 254, 361, 460, 468
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	437, 441
DpnII	GATC	2 cut(s)	435, 439
DraI	TTTAAA	1 cut(s)	474
DraIII	CACNNNGTG	1 cut(s)	426
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	276, 446
Eco72I	CACGTG	1 cut(s)	263
FaeI	CATG	2 cut(s)	306, 516
FaiI	YATR	9 cut(s)	62, 180, 185, 221, 304, 311, 327, 333, 514
FatI	CATG	2 cut(s)	302, 512
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	306, 516
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	77, 142
HpaII	CCGG	1 cut(s)	445
Hpy166II	GTNNAC	3 cut(s)	27, 120, 431
Hpy188I	TCNGA	2 cut(s)	70, 465
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	3 cut(s)	27, 120, 431
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	3 cut(s)	29, 48, 262
HpyCH4V	TGCA	2 cut(s)	52, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	3 cut(s)	29, 48, 262
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	306, 516
Kzo9I	GATC	2 cut(s)	435, 439
LpnPI	CCDG	8 cut(s)	73, 111, 152, 204, 224, 306, 390, 458
LweI	GCATC	4 cut(s)	154, 177, 270, 363
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	3 cut(s)	29, 48, 262
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	437, 441
MboI	GATC	2 cut(s)	435, 439
MnlI	CCTC	6 cut(s)	35, 49, 64, 142, 382, 450
MseI	TTAA	2 cut(s)	473, 488
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	435, 439
NlaIII	CATG	2 cut(s)	306, 516
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	77, 142
PkrI	GCNGC	1 cut(s)	285
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	2 cut(s)	49, 263
PspCI	CACGTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	473, 488
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	435, 439
ScrFI	CCNGG	1 cut(s)	445
SetI	ASST	8 cut(s)	32, 51, 243, 265, 363, 393, 418, 470
SfaNI	GCATC	4 cut(s)	154, 177, 270, 363
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	3 cut(s)	32, 51, 265
TaqI	TCGA	3 cut(s)	32, 40, 438
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	77, 142
Tru1I	TTAA	2 cut(s)	473, 488
Tru9I	TTAA	2 cut(s)	473, 488
TscAI	CASTG	2 cut(s)	129, 431
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	129, 431
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.