Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7040029 .. 7041920

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGAAGAAATTTGAAGCCAAGTTGGTGGGGAAGGAAGAAAAGGATTTGGGTTTGGATGGTTTTACACCGGCAGGGGTTGGGTATGGTAACATCAAAGCGGAGACTATAGAGAGGATGAAGAAGAAGAAGGTGCCCAAATCGGAAAAGAAGAGAATGGCAAGAGAGGCTCAGAAAGAGAAAGAAGAGGTTACAGTGTGTGCCCGATGTCATTCACTAAGAAACTGTGGGTTGATTAAACCTACTACGAGTGCCAATCCTGCTGTGGTTACGGTGGTTGATTGCGTTGATTTTGATGGATCATTCCCTAAACGGGCTGCAAAGTCATTACTGCCAAAGCTTGTTCTTGTGGCCACAAAGGTTGATCTCCTCCGGTCACAAGTTTGGCCTGCTAGATTGGATAGATGGGTCTGCCATCGTGCTAAGGCTGGAGGGGGACCCAAACTAAGTGGGGTGTATATGGTTAGTTCTCGTAAGGATTTGAATGTCAGGAATCTGTTGTCCTTCCTCAAAGAATTGTCCACACTCATAAATGCACTCGCAAAGAAAGAAGGAGTAAAGGTCACAAAGCTCACGGAAGCTCCAGTTCCTGGGATAACATTAGGAATATGGAGAGTCGGAGGGATCTTGTCAGCTAAGGCAGTGTTGTTTGACACTCCAGGACTTCTGCATCCATATTTACTAGATCTTGTTCAAGCTTCTGTCGAAACAATTTATTTGACAGCTTGGGCTTCGCCTAATATTTCTTTACATATGGAGAAGATAGAAAATGCTGATGAGACATGGAAGACGCATGGTGGTCTTAGGTTGCAGGACGGAACTAGTCTTTGTGTTCTTGCAAATGCAACGGCTCCTTACCTTTTACTGACTGGACTGCGCCTTACGCTTTTGCAGCCTCCAATTGGCGCTGATCATGCTGCCGAGATGAGAAAACGGGAAGAGAGGGAAATCAAAGTGTCTGGAGCAAGTTGGGATGTGAATAGCATCGATATTGCAGTAGCTGGTTTAGGTTGGTTTTCCTTGGGTCTCAAAAGGGGAAGCAAAGTTGCAATATCTGAGGCAATTGGTAACCAGAGTAAAGTTAAAGCTCACGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

367

Amino Acids

39.85

Weight (kDa)

9.64

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	2 cut(s)	307, 632
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	313, 590, 902
AgsI	TTSAA	3 cut(s)	17, 484, 695
AhlI	ACTAGT	1 cut(s)	821
AjnI	CCWGG	2 cut(s)	589, 658
AluBI	AGCT	8 cut(s)	340, 571, 581, 635, 698, 725, 1001, 1088
AluI	AGCT	8 cut(s)	340, 571, 581, 635, 698, 725, 1001, 1088
Alw26I	GTCTC	3 cut(s)	98, 773, 1031
AlwI	GGATC	2 cut(s)	307, 632
AlwNI	CAGNNNCTG	2 cut(s)	590, 1001
AoxI	GGCC	2 cut(s)	351, 386
ApeKI	GCWGC	3 cut(s)	317, 892, 917
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	879, 908
AspS9I	GGNCC	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	2 cut(s)	138, 205
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	794
BbvI	GCAGC	3 cut(s)	304, 904, 904
BccI	CCATC	4 cut(s)	53, 290, 399, 423
BceAI	ACGGC	1 cut(s)	864
BciT130I	CCWGG	2 cut(s)	591, 660
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	3 cut(s)	98, 773, 1031
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	3 cut(s)	393, 683, 822
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	909
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	3 cut(s)	318, 893, 918
BlsI	GCNGC	3 cut(s)	319, 894, 919
Bme1390I	CCNGG	2 cut(s)	591, 660
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	4 cut(s)	135, 438, 439, 852
BmrFI	CCNGG	2 cut(s)	591, 660
BmsI	GCATC	2 cut(s)	679, 993
BpiI	GAAGAC	1 cut(s)	794
BpmI	CTGGAG	4 cut(s)	450, 567, 642, 981
Bpu10I	CCTNAGC	2 cut(s)	423, 636
Bsa29I	ATCGAT	1 cut(s)	987
BsaI	GGTCTC	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	590, 1020
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	4 cut(s)	546, 565, 576, 595
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 590, 902
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	584, 874
BseBI	CCWGG	2 cut(s)	591, 660
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	590, 1020
BseGI	GGATG	4 cut(s)	64, 123, 670, 979
BseLI	CCNNNNNNNGG	3 cut(s)	313, 590, 902
BseMII	CTCAG	2 cut(s)	185, 1047
BseNI	ACTGG	2 cut(s)	584, 874
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	2 cut(s)	138, 205
BseXI	GCAGC	3 cut(s)	304, 904, 904
BshFI	GGCC	2 cut(s)	353, 388
BshNI	GGYRCC	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	987
BsiSI	CCGG	2 cut(s)	71, 373
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	3 cut(s)	313, 590, 902
BsmAI	GTCTC	3 cut(s)	98, 773, 1031
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	353, 388
Bso31I	GGTCTC	1 cut(s)	1031
Bsp1286I	GDGCHC	2 cut(s)	138, 205
Bsp143I	GATC	5 cut(s)	299, 364, 624, 685, 910
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	353, 388
BspCNI	CTCAG	2 cut(s)	184, 1048
BspDI	ATCGAT	1 cut(s)	987
BspLI	GGNNCC	4 cut(s)	135, 438, 439, 852
BspPI	GGATC	2 cut(s)	307, 632
BspT107I	GGYRCC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	1031
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	584, 874
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	590, 1020
BssMI	GATC	5 cut(s)	299, 364, 624, 685, 910
BssT1I	CCWWGG	1 cut(s)	1020
Bst2UI	CCWGG	2 cut(s)	591, 660
Bst4CI	ACNGT	3 cut(s)	196, 227, 274
Bst6I	CTCTTC	3 cut(s)	146, 180, 933
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	7 cut(s)	171, 218, 423, 446, 636, 803, 1056
BstEII	GGTNACC	1 cut(s)	1067
BstF5I	GGATG	4 cut(s)	64, 123, 670, 979
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	2 cut(s)	879, 908
BstKTI	GATC	5 cut(s)	302, 367, 627, 688, 913
BstMAI	GTCTC	3 cut(s)	98, 773, 1031
BstMBI	GATC	5 cut(s)	299, 364, 624, 685, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 260, 883, 892, 914
BstNI	CCWGG	2 cut(s)	591, 660
BstPI	GGTNACC	1 cut(s)	1067
BstSCI	CCNGG	2 cut(s)	589, 658
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	2 cut(s)	138, 205
BstV1I	GCAGC	3 cut(s)	304, 904, 904
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	624, 685
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	2 cut(s)	624, 685
Bsu15I	ATCGAT	1 cut(s)	987
BsuRI	GGCC	2 cut(s)	353, 388
BsuTUI	ATCGAT	1 cut(s)	987
BtsCI	GGATG	4 cut(s)	64, 123, 670, 979
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	201, 648
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	2 cut(s)	590, 1001
CfoI	GCGC	2 cut(s)	879, 908
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	987
CseI	GACGC	1 cut(s)	799
CspCI	CAANNNNNGTGG	4 cut(s)	343, 378, 430, 465
CviAII	CATG	3 cut(s)	783, 794, 914
DdeI	CTNAG	7 cut(s)	171, 218, 423, 446, 636, 803, 1056
DpnI	GATC	5 cut(s)	301, 366, 626, 687, 912
DpnII	GATC	5 cut(s)	299, 364, 624, 685, 910
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	146, 180, 933
EarI	CTCTTC	3 cut(s)	146, 180, 933
Eco130I	CCWWGG	1 cut(s)	1020
Eco31I	GGTCTC	1 cut(s)	1031
Eco47I	GGWCC	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	1067
EcoO109I	RGGNCCY	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	589, 658
EcoT14I	CCWWGG	1 cut(s)	1020
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	3 cut(s)	786, 797, 917
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	782, 793, 913
FauNDI	CATATG	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	3 cut(s)	318, 893, 918
FokI	GGATG	4 cut(s)	71, 130, 657, 986
Fsp4HI	GCNGC	3 cut(s)	318, 893, 918
FspBI	CTAG	3 cut(s)	393, 683, 822
GlaI	GCGC	2 cut(s)	878, 907
GluI	GCNGC	3 cut(s)	318, 893, 918
GsuI	CTGGAG	4 cut(s)	450, 567, 642, 981
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	353, 388
HapII	CCGG	2 cut(s)	71, 373
HgaI	GACGC	1 cut(s)	799
HhaI	GCGC	2 cut(s)	879, 908
Hin1II	CATG	3 cut(s)	786, 797, 917
Hin6I	GCGC	2 cut(s)	877, 906
HinP1I	GCGC	2 cut(s)	877, 906
HindIII	AAGCTT	2 cut(s)	338, 696
HinfI	GANTC	2 cut(s)	493, 615
HpaII	CCGG	2 cut(s)	71, 373
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	4 cut(s)	145, 174, 620, 1057
Hpy188III	TCNNGA	2 cut(s)	490, 960
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	4 cut(s)	28, 124, 514, 545
HpyCH4III	ACNGT	3 cut(s)	196, 227, 274
HpyCH4V	TGCA	9 cut(s)	320, 536, 670, 811, 839, 845, 892, 995, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 260, 883, 892, 914
HpyF3I	CTNAG	7 cut(s)	171, 218, 423, 446, 636, 803, 1056
Hsp92II	CATG	3 cut(s)	786, 797, 917
HspAI	GCGC	2 cut(s)	877, 906
KflI	GGGWCCC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	5 cut(s)	299, 364, 624, 685, 910
LmnI	GCTCC	3 cut(s)	586, 856, 962
Lsp1109I	GCAGC	3 cut(s)	304, 904, 904
LweI	GCATC	2 cut(s)	679, 993
MaeI	CTAG	3 cut(s)	393, 683, 822
MaeIII	GTNAC	6 cut(s)	89, 190, 268, 375, 562, 1067
MalI	GATC	5 cut(s)	301, 366, 626, 687, 912
MboI	GATC	5 cut(s)	299, 364, 624, 685, 910
MfeI	CAATTG	2 cut(s)	900, 1062
MflI	RGATCY	2 cut(s)	624, 685
MhlI	GDGCHC	2 cut(s)	138, 205
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	5 cut(s)	11, 515, 711, 900, 1062
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	1 cut(s)	598
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	2 cut(s)	237, 1083
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	2 cut(s)	71, 373
MspR9I	CCNGG	2 cut(s)	591, 660
MunI	CAATTG	2 cut(s)	900, 1062
MvaI	CCWGG	2 cut(s)	591, 660
MwoI	GCNNNNNNNGC	5 cut(s)	167, 260, 883, 892, 914
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	5 cut(s)	299, 364, 624, 685, 910
NlaIII	CATG	3 cut(s)	786, 797, 917
NlaIV	GGNNCC	4 cut(s)	135, 438, 439, 852
NmeAIII	GCCGAG	1 cut(s)	946
NmuCI	GTSAC	2 cut(s)	375, 562
PfeI	GAWTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	319, 894, 919
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	589, 658
PspEI	GGTNACC	1 cut(s)	1067
PspGI	CCWGG	2 cut(s)	589, 658
PspN4I	GGNNCC	4 cut(s)	135, 438, 439, 852
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	590, 1001
PsuI	RGATCY	2 cut(s)	624, 685
SaqAI	TTAA	2 cut(s)	237, 1083
SatI	GCNGC	3 cut(s)	318, 893, 918
Sau3AI	GATC	5 cut(s)	299, 364, 624, 685, 910
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	2 cut(s)	591, 660
SduI	GDGCHC	2 cut(s)	138, 205
SfaNI	GCATC	2 cut(s)	679, 993
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	5 cut(s)	11, 515, 711, 900, 1062
SsiI	CCGC	1 cut(s)	101
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	3 cut(s)	393, 683, 822
StyD4I	CCNGG	2 cut(s)	589, 658
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	3 cut(s)	196, 227, 274
TaqI	TCGA	2 cut(s)	705, 987
TasI	AATT	5 cut(s)	11, 515, 711, 900, 1062
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	237, 1083
Tru9I	TTAA	2 cut(s)	237, 1083
TscAI	CASTG	2 cut(s)	201, 648
TseFI	GTSAC	2 cut(s)	375, 562
TseI	GCWGC	3 cut(s)	317, 892, 917
Tsp45I	GTSAC	2 cut(s)	375, 562
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	590, 831
TspRI	CASTG	2 cut(s)	201, 648
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	3 cut(s)	393, 683, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.