Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7084606 .. 7085211

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGGGAAGGAGATGTAGGGTTTGGTGGCCAAAGCAACTCTCATTGAGGAAACCATCGTCATCATCCTCCAATTTCTTGCTTGGTTGGTTCGTTTCTTCCTCTCCGTCTTCTCTCGACGTCGTCGTCGCTTTCGCCTGCAATGAGCTTGCGCTTTCTGGTATCCAATCAACCCTCCAGGGAATTCTTCGCGACACGAATGGAAGGATGCCTGTGTTGCTTCAGGATAAGTCTATGATGTGTGTATTGGGTCAAATTTTTGAGGACCAAATAGAAGAAGATCAATCTCTTTCTTCTTGTGGGTGCCACAAGCTCAGTGGATCAGTAGGACAATGTAGGGAAAATTTCGAGGGAAATGGTTATTGGATTCGGATGTTATGTGATCGATCCTCAAGAACATATTGGAAAGGACATTACTTGGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi1

Protein Analysis

143

Amino Acids

16.01

Weight (kDa)

8.2

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	303
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	2 cut(s)	328, 381
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	3 cut(s)	183, 255, 343
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	2 cut(s)	148, 313
AluI	AGCT	2 cut(s)	148, 313
AlwI	GGATC	2 cut(s)	328, 381
AoxI	GGCC	1 cut(s)	29
ApoI	RAATTY	3 cut(s)	183, 255, 343
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	102
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	65, 213, 378
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	385
BsnI	GGCC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	280, 320, 382, 386
Bsp68I	TCGCGA	1 cut(s)	192
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	328, 381
BspT107I	GGYRCC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	4 cut(s)	280, 320, 382, 386
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	139, 150
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	65, 213, 378
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	283, 323, 385, 389
BstMBI	GATC	4 cut(s)	280, 320, 382, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	65, 213, 378
BtsIMutI	CAGTG	1 cut(s)	322
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	139, 150
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviJI	RGCY	3 cut(s)	31, 148, 313
CviKI_1	RGCY	3 cut(s)	31, 148, 313
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	4 cut(s)	282, 322, 384, 388
DpnII	GATC	4 cut(s)	280, 320, 382, 386
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	177
FaiI	YATR	3 cut(s)	236, 379, 400
FokI	GGATG	3 cut(s)	52, 220, 385
GlaI	GCGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	367, 422
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	116, 191, 224, 393
Hpy99I	CGWCG	4 cut(s)	122, 125, 128, 131
HpyAV	CCTTC	2 cut(s)	3, 198
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	280, 320, 382, 386
LpnPI	CCDG	6 cut(s)	144, 151, 164, 191, 209, 225
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	120
MalI	GATC	4 cut(s)	282, 322, 384, 388
MboI	GATC	4 cut(s)	280, 320, 382, 386
MboII	GAAGA	6 cut(s)	90, 102, 179, 285, 287, 290
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	4 cut(s)	73, 183, 255, 343
MluNI	TGGCCA	1 cut(s)	31
MnlI	CCTC	7 cut(s)	42, 79, 112, 185, 256, 343, 400
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	4 cut(s)	280, 320, 382, 386
NlaIV	GGNNCC	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	367, 422
PflFI	GACNNNGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	192
Sau3AI	GATC	4 cut(s)	280, 320, 382, 386
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	3 cut(s)	123, 150, 315
SfaNI	GCATC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	4 cut(s)	73, 183, 255, 343
StyD4I	CCNGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	117, 348, 385
TasI	AATT	4 cut(s)	73, 183, 255, 343
TfiI	GAWTC	2 cut(s)	367, 422
TscAI	CASTG	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	183, 255, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.