pycom14g07120

Gibberellin regulated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
7101564 .. 7102368
805 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGCAAAGGCTTTAAATTTTGTGATGTTCTTCCTTGTTATGCTGTTCTTTGCTCTAACAGTAGAGAACCATGCTACTACCACTGGCACTGAAGCTCCAGCACCGCAGCCCCAAAGCAGTAACAACCATACCATGGTGAAATTTATATATTTTTCAGACTGCAACTTTTTAAAATTATCTGATTTTTCTGCCTCAGTTTTAGATACATTTTTTTACAATATTAGATTGTTAATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.01

Weight (kDa)

6.7

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 16, 140
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 16, 140
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 206
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 81, 87
CviAII CATG 2 cut(s) 71, 133
CviJI RGCY 3 cut(s) 11, 95, 109
CviKI_1 RGCY 3 cut(s) 11, 95, 109
DdeI CTNAG 1 cut(s) 193
DraI TTTAAA 2 cut(s) 15, 171
Eco130I CCWWGG 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 74, 136
FaiI YATR 6 cut(s) 41, 72, 129, 134, 146, 148
FatI CATG 2 cut(s) 70, 132
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 81
Hin1II CATG 2 cut(s) 74, 136
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 157, 181
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 2 cut(s) 74, 136
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 69, 111
Lsp1109I GCAGC 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 22
MluCI AATT 4 cut(s) 16, 140, 173, 231
MnlI CCTC 1 cut(s) 202
MseI TTAA 4 cut(s) 14, 170, 230, 234
NcoI CCATGG 1 cut(s) 132
NlaIII CATG 2 cut(s) 74, 136
PacI TTAATTAA 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 14, 170, 230, 234
SatI GCNGC 1 cut(s) 107
SetI ASST 1 cut(s) 97
SgeI CNNG 5 cut(s) 47, 83, 96, 110, 145
Sse9I AATT 4 cut(s) 16, 140, 173, 231
SsiI CCGC 1 cut(s) 104
SspI AATATT 1 cut(s) 220
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 61
TasI AATT 4 cut(s) 16, 140, 173, 231
Tru1I TTAA 4 cut(s) 14, 170, 230, 234
Tru9I TTAA 4 cut(s) 14, 170, 230, 234
TscAI CASTG 2 cut(s) 88, 94
TseI GCWGC 1 cut(s) 106
TspRI CASTG 2 cut(s) 88, 94
Van91I CCANNNNNTGG 1 cut(s) 133
XapI RAATTY 2 cut(s) 16, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.