Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7173877 .. 7174068

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCAGCAACATTGGGTTCCTTCAAGTACAATTTCCGGGAGAAGAGAGAGCGATTGCTCTTCCTCCAGAAGGACTGCCCCTACTCCGAGCTGGGTGGCTTCCCCCACATCGAGGAGCAAGACCCGTCGTTGGGATTTCCCCGCTGCTGCACTTTCAGATCAGTCACCGACCGAATCGTCGTCCGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

64

Amino Acids

7.36

Weight (kDa)

8.46

Isoelectric Point (pI)

68.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AciI	CCGC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	70, 112, 130, 131
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	5, 144, 147
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	17, 131, 134
BcnI	CCSGG	1 cut(s)	38
BisI	GCNGC	3 cut(s)	6, 145, 148
BlsI	GCNGC	3 cut(s)	7, 146, 149
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 112, 130, 131
BseLI	CCNNNNNNNGG	4 cut(s)	70, 112, 130, 131
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	17, 131, 134
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	37, 184
BslI	CCNNNNNNNGG	4 cut(s)	70, 112, 130, 131
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	65
BssMI	GATC	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	38, 65
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	17, 131, 134
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	2 cut(s)	91, 99
CviKI_1	RGCY	2 cut(s)	91, 99
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	38, 65
EarI	CTCTTC	2 cut(s)	38, 65
EcoNI	CCTNNNNNAGG	1 cut(s)	68
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	6, 145, 148
Fsp4HI	GCNGC	3 cut(s)	6, 145, 148
GluI	GCNGC	3 cut(s)	6, 145, 148
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	50
HapII	CCGG	2 cut(s)	37, 184
HinfI	GANTC	1 cut(s)	174
HpaII	CCGG	2 cut(s)	37, 184
HphI	GGTGA	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	88, 158
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	2 cut(s)	130, 182
HpyAV	CCTTC	2 cut(s)	31, 64
HpyCH4V	TGCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	158
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	50, 77, 80
Lsp1109I	GCAGC	3 cut(s)	17, 131, 134
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	2 cut(s)	52, 55
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	2 cut(s)	74, 106
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	37, 184
MspR9I	CCNGG	1 cut(s)	38
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	174
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	7, 146, 149
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	3 cut(s)	6, 145, 148
Sau3AI	GATC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	1 cut(s)	93
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	5, 144, 147
Tsp45I	GTSAC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.