Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7236161 .. 7236538

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTTTGTGATTCAGACTCAGAAGAGCTCTCGTTGGAAGAAAAGCTGGCTTTCGTGCATGAAACTAGACATGCTTTTGGGAGAACTGCCTTGCTCTTGAGTGGGGGCGCTTCTCTTGGGTCTTTCCATGTTGGTGTGGTTAAAACGCTGGTCGAACATAAGTTTTTGCCGAGAATAATTGCTGGTTCCAGTGTAGGATCGATTATGTGTTCTGTTGTTGCCACTAGGTCTTGGCCTGAGCTCCAGAGTTTTTTTGAGGATTCTTGGCACTCATTGCAGTTTTTTGATCAGATGGGTGGGATTTTTACAGTTGTCAAGAGGGTCATGACACGTGGGGATCAGGCAGTTACAAATGATGCTAAGGCATCTAACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012511 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019433 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 map00100 map00561 map00564 map00565 map00590 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

DUF3336 Patatin

Protein Analysis

126

Amino Acids

13.71

Weight (kDa)

5.69

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	31 - 91	6.9e-11	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	205, 345
AcvI	CACGTG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	329
AluBI	AGCT	3 cut(s)	28, 46, 241
AluI	AGCT	3 cut(s)	28, 46, 241
Alw21I	GWGCWC	2 cut(s)	30, 243
AlwI	GGATC	2 cut(s)	205, 345
AoxI	GGCC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	30, 243
BbrPI	CACGTG	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	30, 243
BccI	CCATC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	2 cut(s)	66, 225
BfoI	RGCGCY	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	2 cut(s)	346, 374
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	2 cut(s)	237, 360
BpuEI	CTTGAG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	33, 228
BseNI	ACTGG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	30, 243
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	30, 243
Bsp143I	GATC	3 cut(s)	197, 286, 337
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	32, 229
BspDI	ATCGAT	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	205, 345
BspQI	GCTCTTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	197, 286, 337
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	19, 237, 360
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	200, 289, 340
BstMBI	GATC	3 cut(s)	197, 286, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	200
CviAII	CATG	4 cut(s)	59, 71, 128, 325
CviJI	RGCY	5 cut(s)	28, 46, 50, 235, 241
CviKI_1	RGCY	5 cut(s)	28, 46, 50, 235, 241
DdeI	CTNAG	3 cut(s)	19, 237, 360
DpnI	GATC	3 cut(s)	199, 288, 339
DpnII	GATC	3 cut(s)	197, 286, 337
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	2 cut(s)	28, 241
Eco24I	GRGCYC	2 cut(s)	30, 243
Eco53kI	GAGCTC	2 cut(s)	28, 241
Eco72I	CACGTG	1 cut(s)	332
EcoICRI	GAGCTC	2 cut(s)	28, 241
EcoT38I	GRGCYC	2 cut(s)	30, 243
FaeI	CATG	4 cut(s)	62, 74, 131, 328
FaiI	YATR	6 cut(s)	60, 72, 129, 159, 206, 326
FatI	CATG	4 cut(s)	58, 70, 127, 324
FbaI	TGATCA	1 cut(s)	286
FriOI	GRGCYC	2 cut(s)	30, 243
FspBI	CTAG	2 cut(s)	66, 225
GlaI	GCGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	62, 74, 131, 328
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	11, 17, 260
Hpy188I	TCNGA	3 cut(s)	16, 22, 291
Hpy188III	TCNNGA	4 cut(s)	97, 244, 316, 325
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	58, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	19, 237, 360
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	62, 74, 131, 328
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	197, 286, 337
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	7 cut(s)	32, 134, 168, 202, 249, 257, 326
LweI	GCATC	2 cut(s)	346, 374
MaeI	CTAG	2 cut(s)	66, 225
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	199, 288, 339
MboI	GATC	3 cut(s)	197, 286, 337
MboII	GAAGA	2 cut(s)	35, 50
MhlI	GDGCHC	2 cut(s)	30, 243
MluCI	AATT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	2 cut(s)	250, 312
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	3 cut(s)	197, 286, 337
NlaIII	CATG	4 cut(s)	62, 74, 131, 328
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	195
NspI	RCATGY	1 cut(s)	74
PagI	TCATGA	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	11, 260
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	30, 243
PspCI	CACGTG	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	2 cut(s)	30, 243
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	197, 286, 337
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	30, 243
SetI	ASST	5 cut(s)	30, 48, 230, 243, 334
SfaNI	GCATC	2 cut(s)	346, 374
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	66, 225
SstI	GAGCTC	2 cut(s)	30, 243
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	153, 200
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	11, 260
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	2 cut(s)	66, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.