Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7455644 .. 7456407

Gene Structure 764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTATTACAAAAAAAAAACATAAAAAATAAAAACGCAGAAACCCATCGCTTCCCCACAACACCCCCTCCCCCTCTCCCCCACTCTGTTCACCTCCCCCAACCGATCCGTCTCCAAACCCATTTAGTCCCTTTCGCCGTCCTCCACCATCAACTTGCCTCCGTCGCCTCCCCTCCCATCCAAAAAATCCACCCACAACCGAACCCAACCCATTCCCCTTCCACGCGGAGAACCTCGCCGCTCTTCTCCTTCTACATCAAAATCCCACTCCCCCTAATCTCCCGAACGTCCCACTGTTTCTTCCGCCCAATTCTCCGCTTCCCTAAATCTCAACCGACCCCAATTTGTACCGGCACCAGCAGCTTCTCCATGGACAAAAGACTCGACCTTTGCACTCTGGCTCTCTCCAACGACTCTCCGTCGCCGTCGTCTCCGGCGGTTTCCAACAAAGCCAAAAGGAAAGCACGGCGGGAGTCTCCCGAGGGGGTCCTGAAGCACAAGCTAGACATGTGTTCCAGGCACGGGCAGCTGATCCAATCTCTGAGCCTTTTCGACGAGGTCAGGAGCAATGGGGTGCCGCTTGGCCTGCACCATTACAATGTTCTGCTCTACCTTTGCTCCTCCAATGGCGGCGGTGATGACGGTGATGTGGGTTTGAGAATTTTCGCCAAATGGTTGAGGGCGAGGCTGGCGATCGCGGCGGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

237

Amino Acids

26.24

Weight (kDa)

10.16

Isoelectric Point (pI)

75.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	152 - 211	8.4e-14	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 574
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	2 cut(s)	226, 698
AclWI	GGATC	2 cut(s)	100, 526
AcsI	RAATTY	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	522
AflIII	ACRYGT	1 cut(s)	507
AhdI	GACNNNNNGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	3 cut(s)	363, 502, 529
AluI	AGCT	3 cut(s)	363, 502, 529
Alw26I	GTCTC	3 cut(s)	116, 435, 480
AlwI	GGATC	2 cut(s)	100, 526
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	2 cut(s)	360, 526
ApoI	RAATTY	1 cut(s)	660
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AsiSI	GCGATCGC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	83, 647, 656
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	487
BanI	GGYRCC	2 cut(s)	353, 574
BbvI	GCAGC	2 cut(s)	372, 538
BccI	CCATC	3 cut(s)	54, 156, 185
BceAI	ACGGC	3 cut(s)	122, 409, 482
BciT130I	CCWGG	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	116, 435, 480
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	6 cut(s)	239, 361, 527, 578, 631, 699
BlsI	GCNGC	6 cut(s)	240, 362, 528, 579, 632, 700
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	487
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	3 cut(s)	355, 488, 576
BmrFI	CCNGG	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	369, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 602, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	369, 480
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	372, 538
BsgI	GTGCAG	1 cut(s)	572
Bsh1236I	CGCG	2 cut(s)	226, 698
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	585
BshNI	GGYRCC	2 cut(s)	353, 574
BsiEI	CGRYCG	1 cut(s)	696
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	351, 434
BslFI	GGGAC	2 cut(s)	113, 274
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	3 cut(s)	116, 435, 480
BsmBI	CGTCTC	2 cut(s)	116, 435
BsmFI	GGGAC	2 cut(s)	113, 274
BsnI	GGCC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	105, 531, 693
Bsp19I	CCATGG	1 cut(s)	369
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	534
BspFNI	CGCG	2 cut(s)	226, 698
BspLI	GGNNCC	3 cut(s)	355, 488, 576
BspPI	GGATC	2 cut(s)	100, 526
BspQI	GCTCTTC	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	353, 574
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	369, 480
BssMI	GATC	3 cut(s)	105, 531, 693
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	296, 644
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	587, 690
BstDEI	CTNAG	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	226, 698
BstKTI	GATC	3 cut(s)	108, 534, 696
BstMAI	GTCTC	3 cut(s)	116, 435, 480
BstMBI	GATC	3 cut(s)	105, 531, 693
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 360, 526, 586, 689, 698
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	515
BstUI	CGCG	2 cut(s)	226, 698
BstV1I	GCAGC	2 cut(s)	372, 538
BsuRI	GGCC	1 cut(s)	585
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	587, 690
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	2 cut(s)	370, 508
CviJI	RGCY	8 cut(s)	363, 401, 452, 502, 529, 546, 585, 688
CviKI_1	RGCY	8 cut(s)	363, 401, 452, 502, 529, 546, 585, 688
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	3 cut(s)	107, 533, 695
DpnII	GATC	3 cut(s)	105, 531, 693
DriI	GACNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	2 cut(s)	116, 435
FaeI	CATG	2 cut(s)	373, 511
FaiI	YATR	3 cut(s)	23, 371, 509
FaqI	GGGAC	2 cut(s)	113, 274
FatI	CATG	2 cut(s)	369, 507
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	6 cut(s)	239, 361, 527, 578, 631, 699
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	6 cut(s)	239, 361, 527, 578, 631, 699
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	6 cut(s)	239, 361, 527, 578, 631, 699
HaeIII	GGCC	1 cut(s)	585
HapII	CCGG	2 cut(s)	351, 434
Hin1II	CATG	2 cut(s)	373, 511
HinfI	GANTC	3 cut(s)	381, 413, 473
HpaII	CCGG	2 cut(s)	351, 434
HphI	GGTGA	3 cut(s)	83, 647, 656
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	4 cut(s)	282, 479, 490, 562
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	4 cut(s)	167, 424, 430, 557
HpyAV	CCTTC	2 cut(s)	228, 259
HpyCH4III	ACNGT	2 cut(s)	296, 644
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	393, 589
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 360, 526, 586, 689, 698
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	373, 511
Kzo9I	GATC	3 cut(s)	105, 531, 693
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	564, 623
Lsp1109I	GCAGC	2 cut(s)	372, 538
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	287
MalI	GATC	3 cut(s)	107, 533, 695
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	105, 531, 693
MboII	GAAGA	2 cut(s)	235, 292
MluCI	AATT	3 cut(s)	309, 342, 660
MlyI	GAGTC	3 cut(s)	375, 407, 482
MmeI	TCCRAC	2 cut(s)	432, 468
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	2 cut(s)	351, 434
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	2 cut(s)	226, 698
MwoI	GCNNNNNNNGC	6 cut(s)	164, 360, 526, 586, 689, 698
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	105, 531, 693
NlaIII	CATG	2 cut(s)	373, 511
NlaIV	GGNNCC	3 cut(s)	355, 488, 576
NspI	RCATGY	1 cut(s)	511
PciI	ACATGT	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	240, 362, 528, 579, 632, 700
Ple19I	CGATCG	1 cut(s)	696
PleI	GAGTC	3 cut(s)	375, 407, 481
PpsI	GAGTC	3 cut(s)	375, 407, 481
PpuMI	RGGWCCY	1 cut(s)	487
PscI	ACATGT	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	3 cut(s)	355, 488, 576
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	529
RgaI	GCGATCGC	1 cut(s)	696
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	248
SatI	GCNGC	6 cut(s)	239, 361, 527, 578, 631, 699
Sau3AI	GATC	3 cut(s)	105, 531, 693
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	3 cut(s)	375, 407, 482
ScrFI	CCNGG	1 cut(s)	517
SetI	ASST	9 cut(s)	96, 236, 290, 365, 390, 504, 531, 561, 615
SfaAI	GCGATCGC	1 cut(s)	696
SgfI	GCGATCGC	1 cut(s)	696
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	3 cut(s)	309, 342, 660
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	296, 644
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	384, 552
TasI	AATT	3 cut(s)	309, 342, 660
TauI	GCSGC	4 cut(s)	241, 580, 633, 701
TscAI	CASTG	1 cut(s)	299
TseI	GCWGC	2 cut(s)	360, 526
TspGWI	ACGGA	3 cut(s)	98, 151, 408
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.