Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7666729 .. 7667323

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCATGGTGTCGTGGTTCTCTCGCCTCTGCCGTTCCTCACAGCGGTTCTTCTTCACCTCCTTCGCCCTCCAAACCTCCATGTCCACCAAGATGGCGAGAACCCAAAATACAACGAACACCGAGAGCTCGAAAACCTCATTTCTCTGGTCGAGCTTGCTGCTTTCGGTCCTAGATGGCCTTGTCCTCACGAGCCTGCAACAGCTCGCCTTTCTCATACCAGAAGCCATCCAGTCCCTACTTCTCGACCTCTTCATCTTATTCATTGATCAACGGTCGAATGATTTCGTGCTCCTGCTCGACCTCTGCCTCGTTGTTTTACAACTCTGGACGTGGGCCGCTCCGATTCAATGTAGTATGGTACGGTACGGGTTCGTGTCCGAGGAGCTTTTGGCAGAGATGCTTGAGGCACCTAAGGGTGGGGATAGCATATTGGTGTCGATTCGGTTTTGGCCGCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0004457 GO:0004458 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0008144 GO:0008150 GO:0008152 GO:0008720 GO:0008891 GO:0009056 GO:0009438 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016898 GO:0016899 GO:0017076 GO:0019154 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042180 GO:0042182 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046185 GO:0048037 GO:0050660 GO:0050662 GO:0051596 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

5.33

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	3 cut(s)	46, 339, 455
AcoI	YGGCCR	2 cut(s)	3, 452
AfaI	GTAC	2 cut(s)	363, 368
AfiI	CCNNNNNNNGG	2 cut(s)	45, 419
AgsI	TTSAA	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	333
AluBI	AGCT	4 cut(s)	129, 156, 205, 388
AluI	AGCT	4 cut(s)	129, 156, 205, 388
Alw21I	GWGCWC	2 cut(s)	131, 294
AoxI	GGCC	4 cut(s)	3, 178, 336, 452
ApeKI	GCWGC	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	169, 336
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	131, 294
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	88, 170, 236
BceAI	ACGGC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	3 cut(s)	161, 339, 455
BlsI	GCNGC	3 cut(s)	162, 340, 456
Bme18I	GGWCC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	169, 336
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	6, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 419
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	6, 381
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	45, 419
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	5, 180, 338, 454
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	131, 294
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	45, 419
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	5, 180, 338, 454
Bsp1286I	GDGCHC	2 cut(s)	131, 294
Bsp143I	GATC	1 cut(s)	268
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	46, 339, 455
BspANI	GGCC	4 cut(s)	5, 180, 338, 454
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	6, 381
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	276, 366
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	158, 197, 207
BstDEI	CTNAG	2 cut(s)	414, 458
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	5, 180, 338, 454
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	158, 197, 207
Cfr13I	GGNCC	2 cut(s)	169, 336
Csp6I	GTAC	2 cut(s)	362, 367
CviAII	CATG	2 cut(s)	7, 82
CviQI	GTAC	2 cut(s)	362, 367
DdeI	CTNAG	2 cut(s)	414, 458
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	2 cut(s)	3, 452
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 85
FaiI	YATR	5 cut(s)	8, 83, 218, 359, 431
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	6, 81
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	161, 339, 455
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	161, 339, 455
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	161, 339, 455
HaeIII	GGCC	4 cut(s)	5, 180, 338, 454
Hin1II	CATG	2 cut(s)	10, 85
HinfI	GANTC	2 cut(s)	346, 442
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	345, 382
Hpy188III	TCNNGA	3 cut(s)	190, 245, 328
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	276, 366
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	414, 458
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	10, 85
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	3 cut(s)	297, 346, 385
LpnPI	CCDG	6 cut(s)	133, 209, 234, 245, 308, 313
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	332
MalI	GATC	1 cut(s)	270
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	43, 46, 244
MhlI	GDGCHC	2 cut(s)	131, 294
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	92, 434
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	46, 457
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	10, 85
NlaIV	GGNNCC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	346, 442
PkrI	GCNGC	3 cut(s)	162, 340, 456
Psp124BI	GAGCTC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	169, 336
PsrI	GAACNNNNNNTAC	2 cut(s)	94, 126
RsaI	GTAC	2 cut(s)	363, 368
RsaNI	GTAC	2 cut(s)	362, 367
RseI	CAYNNNNRTG	2 cut(s)	92, 434
SacI	GAGCTC	1 cut(s)	131
SatI	GCNGC	3 cut(s)	161, 339, 455
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	169, 336
SduI	GDGCHC	2 cut(s)	131, 294
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	92, 434
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	3 cut(s)	46, 339, 455
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	276, 366
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	6 cut(s)	131, 152, 246, 278, 300, 440
TaqII	GACCGA	1 cut(s)	157
TauI	GCSGC	2 cut(s)	341, 457
TfiI	GAWTC	2 cut(s)	346, 442
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	244, 253
VpaK11BI	GGWCC	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.