pycom14g07720

Ferredoxin-dependent glutamate synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
8023073 .. 8023294
222 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGTCCCAATTCCAACACTCAACAGACGTTTTCCTAATTTCATTGATGTTTTGGTTCAAGGAAAAAACTGGAAGCGGCAAGGGCGCAGCTATCCTGAAGGAGTGGGACAAATATTTACCACTCTTTTGGCAGCTGGTTCCACCTAGTGAAGAAGACACTCCAGAGGCATGTGCAGATTATGAGCAAACAGCTGCAGGTGCGGTGACTTTGCAGTCCGCGTAG

Protein Analysis

74

Amino Acids

8.19

Weight (kDa)

4.49

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
AasI GACNNNNNNGTC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 185
AccII CGCG 1 cut(s) 218
AciI CCGC 3 cut(s) 75, 200, 216
AcuI CTGAAG 1 cut(s) 116
AdeI CACNNNGTG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 89, 133, 191
AluI AGCT 3 cut(s) 89, 133, 191
ApeKI GCWGC 3 cut(s) 86, 130, 191
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 98, 142, 178
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 4 cut(s) 76, 87, 131, 192
BlsI GCNGC 4 cut(s) 77, 88, 132, 193
BmiI GGNNCC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 3 cut(s) 98, 142, 178
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BspACI CCGC 3 cut(s) 75, 200, 216
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 81, 197
BstNSI RCATGY 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 98, 142, 178
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 86
CviAII CATG 1 cut(s) 168
CviJI RGCY 3 cut(s) 89, 133, 191
CviKI_1 RGCY 3 cut(s) 89, 133, 191
DraIII CACNNNGTG 1 cut(s) 146
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 116
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 169, 180
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 4 cut(s) 76, 87, 131, 192
Fsp4HI GCNGC 4 cut(s) 76, 87, 131, 192
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 76, 87, 131, 192
GsuI CTGGAG 1 cut(s) 144
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HphI GGTGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 94, 161
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 173, 194, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 197
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 54, 107, 119, 174, 180
Lsp1109I GCAGC 3 cut(s) 98, 142, 178
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 2 cut(s) 161, 164
MluCI AATT 2 cut(s) 8, 36
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 1 cut(s) 157
MspA1I CMGCKG 2 cut(s) 133, 191
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 81, 197
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 185
PkrI GCNGC 4 cut(s) 77, 88, 132, 193
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 196
PvuII CAGCTG 2 cut(s) 133, 191
SatI GCNGC 4 cut(s) 76, 87, 131, 192
SetI ASST 6 cut(s) 30, 91, 135, 145, 193, 199
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 9 cut(s) 70, 81, 91, 106, 146, 156, 173, 180, 207
Sse9I AATT 2 cut(s) 8, 36
SsiI CCGC 3 cut(s) 75, 200, 216
SspI AATATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 144
TaiI ACGT 1 cut(s) 30
TasI AATT 2 cut(s) 8, 36
TauI GCSGC 1 cut(s) 78
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 86, 130, 191
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 30
XceI RCATGY 1 cut(s) 171
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.