Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8024429 .. 8024896

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAAAGGATTTCTTTCTTCTATGCAATTGAGAATGAAAAGGTGGTCCACAAGACCATAAAGATATACAATGTTGACCGCGCAGTTTGTGGACGTATAGCAGGTGTGGTTGCCAAAAAATATGGTGACACTGGTTTTGCTGGGCAGCTAAACATAACTTTTCAAGGGAGTGCTGGGCAGTCATTTGGGTGCTTCTTGACTCCTGGGATGAACATTCGACTTGTTGGAGAGGCAAATGATTATGTCGGGAAGGTAAATTTCTCTCAATGCAAGATCTCAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

96

Amino Acids

10.46

Weight (kDa)

9.58

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GXGXG	PF01493	21 - 84	1.2e-20	GXGXG motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	2 cut(s)	140, 173
Bsh1236I	CGCG	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	46
CviJI	RGCY	1 cut(s)	148
CviKI_1	RGCY	1 cut(s)	148
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	202
FaiI	YATR	7 cut(s)	24, 59, 67, 98, 123, 155, 243
FalI	AAGNNNNNCTT	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	146
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	146
GsaI	CCCAGC	2 cut(s)	144, 177
HhaI	GCGC	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	49, 76, 92
Hpy188III	TCNNGA	2 cut(s)	196, 247
Hpy8I	GTNNAC	3 cut(s)	49, 76, 92
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	26, 270
HpySE526I	ACGT	1 cut(s)	94
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	6 cut(s)	87, 117, 126, 159, 189, 216
Lsp1109I	GCAGC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	2 cut(s)	27, 256
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	1 cut(s)	223
MseI	TTAA	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	125
PaqCI	CACCTGC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	140, 173
PspGI	CCWGG	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	5 cut(s)	45, 97, 106, 150, 255
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	27, 256
SsiI	CCGC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	27, 256
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	17, 51, 224
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.