Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8027783 .. 8029025

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATGGTGGAACTGGAGCCAACACTTATTTCAAATGGACTTAGAGAACGAGTTATTTTAAGAGTTGATGGTGGCTTTAAAAGTGGAGTCGATGTCTTAATGGCTGCAGCAATGGGTGCTGATGAATATGGATTTGGTTCTGTTGCAATGATTGCTACAGGGTGTGTTATGGCTCGCATTTGCCATACAAATAATTGTCCAGTTGGTGTAGCCAGTCAGAGAGAAGAACTGCGTGCTCGATTTCCTGGAGTCCCTGGTGATCTTGTCAATTTTTTTCTCTATGTTGCTGAGGAGGTAAGAGGTATGTTAGCACAGTTGGGATATGAGAAGTTAGACGATATAATTGGGCAGACAAATTTACTGAGGCCACGAGATATATCGCTAGTGAAAACTCAGCATCTTGATCTCAGTTATCTTCTCTCAAATGTCGGGTTACCAAAATGGAGCAGTACCACAATCAGGAACCAAGATGTTCACACTAATGGACCTGTTCTGGATGATGTTTTACTAGCAGATCAAGAGGTAACACCTTTTTTTTTTGAGGTGACAGTTAGACTGATGCTTGCTTGTTTAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

194

Amino Acids

21.2

Weight (kDa)

5.05

Isoelectric Point (pI)

23.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_synthase	PF01645	3 - 108	6.7e-40	Conserved region in glutamate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	244, 253
AjuI	GAANNNNNNNTTGG	4 cut(s)	13, 45, 117, 149
AluBI	AGCT	1 cut(s)	575
AluI	AGCT	1 cut(s)	575
Alw21I	GWGCWC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	104, 107
ApoI	RAATTY	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	269, 556
AvaII	GGWCC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	91, 119
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	246, 255
BfaI	CTAG	2 cut(s)	383, 509
BfmI	CTRYAG	2 cut(s)	105, 156
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme1390I	CCNGG	2 cut(s)	246, 255
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	18, 464
BmrFI	CCNGG	2 cut(s)	246, 255
BmsI	GCATC	2 cut(s)	406, 549
BpmI	CTGGAG	2 cut(s)	35, 267
Bpu10I	CCTNAGC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	3 cut(s)	18, 200, 213
Bse3DI	GCAATG	2 cut(s)	117, 153
BseBI	CCWGG	2 cut(s)	246, 255
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	117, 153
BseMII	CTCAG	4 cut(s)	279, 353, 407, 421
BseNI	ACTGG	3 cut(s)	18, 200, 213
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	91, 119
BshFI	GGCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	259, 403, 514
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	4 cut(s)	280, 354, 406, 420
BspLI	GGNNCC	2 cut(s)	18, 464
BspMAI	CTGCAG	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	117, 153
BsrI	ACTGG	3 cut(s)	18, 200, 213
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	259, 403, 514
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	246, 255
Bst4CI	ACNGT	2 cut(s)	315, 550
BstAPI	GCANNNNNTGC	2 cut(s)	116, 152
BstC8I	GCNNGC	3 cut(s)	175, 234, 564
BstDEI	CTNAG	5 cut(s)	41, 288, 362, 393, 407
BstEII	GGTNACC	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	3 cut(s)	262, 406, 517
BstMBI	GATC	3 cut(s)	259, 403, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 152, 572
BstNI	CCWGG	2 cut(s)	246, 255
BstPI	GGTNACC	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	244, 253
BstSFI	CTRYAG	2 cut(s)	105, 156
BstV1I	GCAGC	2 cut(s)	91, 119
BsuRI	GGCC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	3 cut(s)	175, 234, 564
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	450
CviJI	RGCY	7 cut(s)	19, 75, 104, 173, 212, 367, 575
CviKI_1	RGCY	7 cut(s)	19, 75, 104, 173, 212, 367, 575
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	5 cut(s)	41, 288, 362, 393, 407
DpnI	GATC	3 cut(s)	261, 405, 516
DpnII	GATC	3 cut(s)	259, 403, 514
DraI	TTTAAA	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	485
Eco91I	GGTNACC	1 cut(s)	432
EcoO65I	GGTNACC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	244, 253
FaiI	YATR	8 cut(s)	129, 170, 186, 282, 305, 324, 341, 377
FaqI	GGGAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	105, 108
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	105, 108
FspBI	CTAG	2 cut(s)	383, 509
GluI	GCNGC	2 cut(s)	105, 108
GsuI	CTGGAG	2 cut(s)	35, 267
HaeIII	GGCC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	87, 249
HphI	GGTGA	2 cut(s)	269, 556
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	4 cut(s)	401, 460, 494, 518
Hpy8I	GTNNAC	1 cut(s)	475
HpyCH4III	ACNGT	2 cut(s)	315, 550
HpyCH4V	TGCA	2 cut(s)	107, 146
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 152, 572
HpyF3I	CTNAG	5 cut(s)	41, 288, 362, 393, 407
Kzo9I	GATC	3 cut(s)	259, 403, 514
LmnI	GCTCC	2 cut(s)	16, 444
Lsp1109I	GCAGC	2 cut(s)	91, 119
LweI	GCATC	2 cut(s)	406, 549
MaeI	CTAG	2 cut(s)	383, 509
MaeIII	GTNAC	3 cut(s)	432, 523, 544
MalI	GATC	3 cut(s)	261, 405, 516
MboI	GATC	3 cut(s)	259, 403, 514
MboII	GAAGA	2 cut(s)	236, 407
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	4 cut(s)	193, 268, 342, 355
MlyI	GAGTC	2 cut(s)	96, 258
MnlI	CCTC	6 cut(s)	283, 286, 293, 357, 514, 535
MseI	TTAA	3 cut(s)	59, 78, 98
MslI	CAYNNNNRTG	1 cut(s)	480
MspR9I	CCNGG	2 cut(s)	246, 255
MvaI	CCWGG	2 cut(s)	246, 255
MwoI	GCNNNNNNNGC	3 cut(s)	116, 152, 572
NdeII	GATC	3 cut(s)	259, 403, 514
NlaIV	GGNNCC	2 cut(s)	18, 464
NmuCI	GTSAC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	106, 109
PleI	GAGTC	2 cut(s)	95, 257
PpsI	GAGTC	2 cut(s)	95, 257
Psp6I	CCWGG	2 cut(s)	244, 253
PspEI	GGTNACC	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	244, 253
PspN4I	GGNNCC	2 cut(s)	18, 464
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	59, 78, 98
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	3 cut(s)	259, 403, 514
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	96, 258
ScrFI	CCNGG	2 cut(s)	246, 255
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	297, 304, 490, 525, 532, 546, 577
SfaNI	GCATC	2 cut(s)	406, 549
SfcI	CTRYAG	2 cut(s)	105, 156
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	4 cut(s)	193, 268, 342, 355
SspMI	CTAG	2 cut(s)	383, 509
StyD4I	CCNGG	2 cut(s)	244, 253
TaaI	ACNGT	2 cut(s)	315, 550
TaqI	TCGA	2 cut(s)	90, 238
TasI	AATT	4 cut(s)	193, 268, 342, 355
Tru1I	TTAA	3 cut(s)	59, 78, 98
Tru9I	TTAA	3 cut(s)	59, 78, 98
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	2 cut(s)	104, 107
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	2 cut(s)	383, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.