Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10544395 .. 10544891

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCATAATGAAAGGGATATCCATGTTTTTGGTACTTTTCATGGTCATAGAGGTGCAGCAGCTGTTGAATTTTCAGCTCGAGCTTTTCCAGGATTCCTGCAAGCTATGAGTTCGATTAGCAGTCCCAGCAGTGCATTGTTTGAGGCATTCGTTAAGACCGATATAGTATTTAGAGCTGAGGTGGGTTTATACCGGAAATCCAAGAGAGTTATCCAGAAGGATTGGCACCCTGGTTGCACTGCAGCTGCTGCTCTTATTGCTAGAAACAAACTTTTTTTGTGGCTAATGCAGGAGATTGCAGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

9.74

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	4 - 92	6e-06	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	88, 229
AluBI	AGCT	6 cut(s)	62, 77, 83, 104, 176, 245
AluI	AGCT	6 cut(s)	62, 77, 83, 104, 176, 245
AlwNI	CAGNNNCTG	2 cut(s)	62, 248
Ama87I	CYCGRG	1 cut(s)	78
ApeKI	GCWGC	5 cut(s)	56, 59, 242, 245, 248
ApoI	RAATTY	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	5 cut(s)	68, 71, 232, 235, 254
BciT130I	CCWGG	2 cut(s)	90, 231
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	5 cut(s)	57, 60, 243, 246, 249
BlsI	GCNGC	5 cut(s)	58, 61, 244, 247, 250
Bme1390I	CCNGG	2 cut(s)	90, 231
BmeT110I	CYCGRG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	90, 231
Bpu10I	CCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	90, 231
BseDI	CCNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	5 cut(s)	68, 71, 232, 235, 254
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	90, 231
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 248, 257
BstNI	CCWGG	2 cut(s)	90, 231
BstSCI	CCNGG	2 cut(s)	88, 229
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	5 cut(s)	68, 71, 232, 235, 254
BstXI	CCANNNNNNTGG	1 cut(s)	29
BtsI	GCAGTG	2 cut(s)	136, 237
BtsIMutI	CAGTG	2 cut(s)	136, 237
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	62, 248
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	23, 41
CviJI	RGCY	7 cut(s)	62, 77, 83, 104, 176, 245, 283
CviKI_1	RGCY	7 cut(s)	62, 77, 83, 104, 176, 245, 283
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	88, 229
EcoRV	GATATC	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	26, 44
FaiI	YATR	7 cut(s)	6, 24, 42, 48, 107, 164, 190
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	22, 40
Fnu4HI	GCNGC	5 cut(s)	57, 60, 243, 246, 249
Fsp4HI	GCNGC	5 cut(s)	57, 60, 243, 246, 249
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	5 cut(s)	57, 60, 243, 246, 249
GsaI	CCCAGC	1 cut(s)	129
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	26, 44
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	8 cut(s)	4, 56, 100, 134, 237, 242, 289, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 248, 257
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	26, 44
Lsp1109I	GCAGC	5 cut(s)	68, 71, 232, 235, 254
MaeI	CTAG	1 cut(s)	261
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	3 cut(s)	44, 136, 172
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	62, 245
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	90, 231
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	90, 231
MwoI	GCNNNNNNNGC	3 cut(s)	126, 248, 257
NlaIII	CATG	2 cut(s)	26, 44
NlaIV	GGNNCC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	5 cut(s)	58, 61, 244, 247, 250
Psp6I	CCWGG	2 cut(s)	88, 229
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	88, 229
PspN4I	GGNNCC	1 cut(s)	227
PspXI	VCTCGAGB	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	62, 248
PvuII	CAGCTG	2 cut(s)	62, 245
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	57, 60, 243, 246, 249
ScrFI	CCNGG	2 cut(s)	90, 231
SetI	ASST	8 cut(s)	55, 64, 79, 85, 106, 178, 183, 247
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	88, 229
TaqI	TCGA	2 cut(s)	79, 113
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	136, 244
TseI	GCWGC	5 cut(s)	56, 59, 242, 245, 248
TspDTI	ATGAA	2 cut(s)	24, 29
TspRI	CASTG	2 cut(s)	136, 244
XapI	RAATTY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.