Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11252566 .. 11253632

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAAAGCTTCCGAGGGAGCAATTGGATCGTGGGGTTATTTGCTCTTCGGCCGGAAACCATGCCCAGGGTGTTTCCTTGGTTGCTAAGAATTTGAATTGCAGTGCCATGATTGCAATGTCGGTCACCACACTGGAGATTAAGGTTGGGCACCATAGTTGTTCTTATAGGGGATTCATATACGATGAAGCTCAAGCTTATGCTAAGAAGCGGGCGAAAGATGAGGGAAGGAGCTTCGTACCTCCTTTTGATAACCAGGATGTTATTATGGGGCAGGGCACAGTTAGGATGGAAATTATGCGCCACACAAAGGGTTCATTGCATGCAATTTTTGTGTGTGTTGGGGGTGGTGGCCTTATAGCTGGTATTGCTGCATATGAAAGAGGGATGCTCCAAAGATTGCTGATTGTGTCATTTCTTATGCAGGTAAAGATTATTGGTGTGGAGCCCTCTGATGCAAATGCAATGGCATTGTCACTACATCATGGCCAGAGAATAATGTTGGACCAAGTTGGCGGTTTCACAAATGGTGTGGCCATGGAAAAGGTCGGTGAAGAAACCTTCCGCTTATGCAAGGACATGGTTGATGGTGTAGTTCTTGTTAGCTGTGATGCTATCTGTGGCTCAATAAAGGTGAAACGTCTTTCAAGTCTTGAAAATTTTAAGATCTTAAAAGTTATGATCTTAATGCTCTTTTTGCAGGACATGTTTGATGAGACAAGGGGCATTTTAGAACCAGCGGGAGCCTGGGATCTTTACACATTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

257

Amino Acids

27.99

Weight (kDa)

7.62

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	6 - 207	3e-32	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	150
AciI	CCGC	4 cut(s)	211, 516, 565, 740
AclWI	GGATC	2 cut(s)	36, 759
AcoI	YGGCCR	3 cut(s)	51, 487, 534
AcsI	RAATTY	2 cut(s)	91, 658
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	67, 310
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	3 cut(s)	97, 648, 656
AjnI	CCWGG	3 cut(s)	66, 255, 746
AluBI	AGCT	6 cut(s)	10, 191, 197, 234, 362, 606
AluI	AGCT	6 cut(s)	10, 191, 197, 234, 362, 606
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	2 cut(s)	36, 759
AoxI	GGCC	4 cut(s)	51, 352, 487, 534
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	91, 658
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	3 cut(s)	118, 563, 646
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	2 cut(s)	153, 281
BalI	TGGCCA	2 cut(s)	489, 536
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	2 cut(s)	283, 581
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	3 cut(s)	68, 257, 748
BcoDI	GTCTC	1 cut(s)	710
BfuAI	ACCTGC	1 cut(s)	415
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	3 cut(s)	68, 257, 748
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	3 cut(s)	152, 447, 745
BmrFI	CCNGG	3 cut(s)	68, 257, 748
BmsI	GCATC	3 cut(s)	378, 445, 601
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	6 cut(s)	14, 66, 67, 78, 537, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 310
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	3 cut(s)	123, 317, 471
BseBI	CCWGG	3 cut(s)	68, 257, 748
BseDI	CCNNGG	6 cut(s)	14, 66, 67, 78, 537, 747
BseGI	GGATG	3 cut(s)	265, 294, 393
BseLI	CCNNNNNNNGG	2 cut(s)	67, 310
BseMI	GCAATG	3 cut(s)	123, 317, 471
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	2 cut(s)	153, 281
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	53, 354, 489, 536
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	67, 310
BsmAI	GTCTC	1 cut(s)	710
BsnI	GGCC	4 cut(s)	53, 354, 489, 536
Bsp1286I	GDGCHC	3 cut(s)	153, 281, 450
Bsp143I	GATC	4 cut(s)	28, 666, 681, 751
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	4 cut(s)	211, 516, 565, 740
BspANI	GGCC	4 cut(s)	53, 354, 489, 536
BspLI	GGNNCC	3 cut(s)	152, 447, 745
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	36, 759
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	150
BsrDI	GCAATG	3 cut(s)	123, 317, 471
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	6 cut(s)	14, 66, 67, 78, 537, 747
BssMI	GATC	4 cut(s)	28, 666, 681, 751
BssT1I	CCWWGG	2 cut(s)	78, 537
Bst2UI	CCWGG	3 cut(s)	68, 257, 748
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	213, 324
BstDEI	CTNAG	2 cut(s)	87, 204
BstDSI	CCRYGG	1 cut(s)	537
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	265, 294, 393
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	4 cut(s)	31, 669, 684, 754
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	4 cut(s)	28, 666, 681, 751
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 368, 697
BstNI	CCWGG	3 cut(s)	68, 257, 748
BstNSI	RCATGY	2 cut(s)	326, 709
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	66, 255, 746
BstSLI	GKGCMC	2 cut(s)	153, 281
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	666, 751
BstYI	RGATCY	2 cut(s)	666, 751
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	53, 354, 489, 536
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	265, 294, 393
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 131
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	213, 324
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	7 cut(s)	62, 109, 323, 485, 538, 580, 706
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	87, 204
DpnI	GATC	4 cut(s)	30, 668, 683, 753
DpnII	GATC	4 cut(s)	28, 666, 681, 751
EaeI	YGGCCR	3 cut(s)	51, 487, 534
EagI	CGGCCG	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	78, 537
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	505
Eco52I	CGGCCG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	66, 255, 746
EcoT14I	CCWWGG	2 cut(s)	78, 537
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	78, 537
FaeI	CATG	7 cut(s)	65, 112, 326, 488, 541, 583, 709
FatI	CATG	7 cut(s)	61, 108, 322, 484, 537, 579, 705
FauI	CCCGC	2 cut(s)	204, 733
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	3 cut(s)	272, 301, 400
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	372
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	53, 354, 489, 536
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	7 cut(s)	65, 112, 326, 488, 541, 583, 709
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	8, 195
HinfI	GANTC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	118, 563, 646
Hpy188I	TCNGA	2 cut(s)	15, 454
Hpy188III	TCNNGA	1 cut(s)	653
HpyAV	CCTTC	2 cut(s)	222, 571
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 368, 697
HpyF3I	CTNAG	2 cut(s)	87, 204
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	7 cut(s)	65, 112, 326, 488, 541, 583, 709
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	28, 666, 681, 751
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	5 cut(s)	19, 231, 396, 445, 743
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	378, 445, 601
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	2 cut(s)	124, 474
MalI	GATC	4 cut(s)	30, 668, 683, 753
MboI	GATC	4 cut(s)	28, 666, 681, 751
MboII	GAAGA	2 cut(s)	39, 566
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	2 cut(s)	666, 751
MhlI	GDGCHC	3 cut(s)	153, 281, 450
MlsI	TGGCCA	2 cut(s)	489, 536
MluCI	AATT	6 cut(s)	23, 91, 97, 294, 327, 658
MluNI	TGGCCA	2 cut(s)	489, 536
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	9, 217, 252, 377, 460
Mox20I	TGGCCA	2 cut(s)	489, 536
MscI	TGGCCA	2 cut(s)	489, 536
MseI	TTAA	4 cut(s)	141, 663, 671, 686
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	2 cut(s)	489, 536
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	68, 257, 748
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	3 cut(s)	68, 257, 748
MwoI	GCNNNNNNNGC	3 cut(s)	113, 368, 697
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	28, 666, 681, 751
NlaIII	CATG	7 cut(s)	65, 112, 326, 488, 541, 583, 709
NlaIV	GGNNCC	3 cut(s)	152, 447, 745
NmuCI	GTSAC	2 cut(s)	124, 474
NspI	RCATGY	2 cut(s)	326, 709
PaeI	GCATGC	1 cut(s)	326
PasI	CCCWGGG	1 cut(s)	67
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	705
Psp6I	CCWGG	3 cut(s)	66, 255, 746
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	3 cut(s)	66, 255, 746
PspN4I	GGNNCC	3 cut(s)	152, 447, 745
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	666, 751
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	141, 663, 671, 686
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	28, 666, 681, 751
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	68, 257, 748
SduI	GDGCHC	3 cut(s)	153, 281, 450
SfaNI	GCATC	3 cut(s)	378, 445, 601
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	6 cut(s)	23, 91, 97, 294, 327, 658
SsiI	CCGC	4 cut(s)	211, 516, 565, 740
StyD4I	CCNGG	3 cut(s)	66, 255, 746
StyI	CCWWGG	2 cut(s)	78, 537
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	643
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	6 cut(s)	23, 91, 97, 294, 327, 658
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	4 cut(s)	141, 663, 671, 686
Tru9I	TTAA	4 cut(s)	141, 663, 671, 686
TscAI	CASTG	2 cut(s)	109, 138
TseFI	GTSAC	2 cut(s)	124, 474
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	124, 474
TspDTI	ATGAA	4 cut(s)	166, 201, 306, 393
TspRI	CASTG	2 cut(s)	109, 138
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	91, 658
XceI	RCATGY	2 cut(s)	326, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.