Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11283072 .. 11284297

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGCAGGGCACAGTTGGGACGGAAATTATGCGCCAAACAAAGGGTCCATTGCACGCAATTTTTGTGCCTGTTGGGGGTGGTGGCCTTATAGCTGGTATTGCTGCATATGTAAAGAGGGTTGCTCCAAAGGTAAAGATTATTGGTGTGGAGCCCTCTGATGCAAATGCGATGGCATTGTCACTACATCGTGGCCAGAGAATAATGTTGGACCAGGTCGGTGGTTTTGCAGATGGTGTGGCTGTGAAAGAGGTCGGTGAAGAGACCTTCCGCTTATGTAACACGGTTGATGGTGTAGTTCTTGTTAGCCGTGATGCAATCTGCGGCTCAATAAAGGGTTGCCTGCTCCATAATCCACTTACAACATTGGAGAGCTTCTTGCTAGTATTGGATTCAATCATGTTCAAGAGTTTGAGGAGACAAGGAGCATTTTACAACCAGCAGGTGCTCTTTCTCTTGCCGGTGCTGAAGCTTATTGCAAGTATTATGGTCTTAAAGGAGAAAATGTTGTTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004794 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006549 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016841 GO:0019752 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP Thr_dehydrat_C

Protein Analysis

173

Amino Acids

18.46

Weight (kDa)

9.3

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	2 - 109	4.4e-24	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AciI	CCGC	2 cut(s)	271, 324
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	43, 77
AgsI	TTSAA	2 cut(s)	396, 406
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	95, 375, 472
AluI	AGCT	3 cut(s)	95, 375, 472
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	257, 412
AoxI	GGCC	2 cut(s)	85, 193
ApeKI	GCWGC	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	47, 211
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	47, 211
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	166, 227, 284
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	257, 412
BfaI	CTAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	105, 325
BlsI	GCNGC	2 cut(s)	106, 326
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	47, 211
BmgT120I	GGNCC	2 cut(s)	47, 211
BmiI	GGNNCC	2 cut(s)	48, 153
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	151, 304
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BsaI	GGTCTC	1 cut(s)	257
BsaXI	ACNNNNNCTCC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 77
Bse118I	RCCGGY	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	43, 77
BseMI	GCAATG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	87, 195
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	43, 77
BsmAI	GTCTC	2 cut(s)	257, 412
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	87, 195
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	14, 156, 450
BspACI	CCGC	2 cut(s)	271, 324
BspANI	GGCC	2 cut(s)	87, 195
BspLI	GGNNCC	2 cut(s)	48, 153
BspMI	ACCTGC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	16, 286
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	57, 344
BstHHI	GCGC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	257, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	87, 195
BtgZI	GCGATG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	57, 344
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	47, 211
CsiI	ACCWGGT	1 cut(s)	213
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	9 cut(s)	87, 95, 154, 195, 242, 309, 327, 375, 472
CviKI_1	RGCY	9 cut(s)	87, 95, 154, 195, 242, 309, 327, 375, 472
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	47, 211
Eco57I	CTGAAG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	403
FaiI	YATR	8 cut(s)	32, 92, 109, 111, 277, 351, 401, 488
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	105, 325
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	105, 325
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	105, 325
HaeIII	GGCC	2 cut(s)	87, 195
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	16, 286
HpyCH4V	TGCA	7 cut(s)	55, 107, 164, 230, 317, 479, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	34
LmnI	GCTCC	4 cut(s)	130, 151, 351, 425
LpnPI	CCDG	9 cut(s)	81, 84, 200, 209, 227, 356, 428, 452, 474
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	2 cut(s)	151, 304
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	180, 278
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	3 cut(s)	14, 156, 450
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	27, 60
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	4 cut(s)	111, 166, 244, 408
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeI	CATATG	1 cut(s)	109
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	2 cut(s)	48, 153
NmuCI	GTSAC	1 cut(s)	180
PaqCI	CACCTGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	106, 326
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	48, 153
PspPI	GGNCC	2 cut(s)	47, 211
PsyI	GACNNNGTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	105, 325
Sau96I	GGNCC	2 cut(s)	47, 211
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	3 cut(s)	14, 156, 450
SetI	ASST	8 cut(s)	97, 135, 219, 255, 269, 377, 447, 474
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	2 cut(s)	151, 304
SinI	GGWCC	2 cut(s)	47, 211
Sse9I	AATT	2 cut(s)	27, 60
SsiI	CCGC	2 cut(s)	271, 324
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	16, 286
TasI	AATT	2 cut(s)	27, 60
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	47, 211
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.