pycom14g09660

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
11735127 .. 11736499
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGCTCCACTTGCAATTGGACGACATGGACTTTATGCAACTTTGGATTCTCCGGTTCACGTTTTCATGAGATCCTGGAATGCAGCTTGCTGCAATCCAATCCATTGGAAAAAGCTTGACCTGACTCTGCTCAAGTTTAACTTCTTTAATGCTCCTCGAAGATTAACTATTTGGTTGCATGATGAATCGAGCAAAAGACTGAGAGGAATATTGAAGAGTGCTTTACGTTTCAGTTGTGGAAATTTATCTTCCTTGGTTTTCCATTTCGCTTTATTCATAAACGATGACCACTTGATAACGCCGAGAACCCCGGGCCTCAAACAACTTGTTCTACCAACCTGGAAGCTGGGCAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

10.44

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 241
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 2 cut(s) 74, 338
AluBI AGCT 3 cut(s) 86, 115, 346
AluI AGCT 3 cut(s) 86, 115, 346
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 83, 90
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 2 cut(s) 311, 312
AvaI CYCGRG 1 cut(s) 310
BbvI GCAGC 2 cut(s) 77, 95
BciT130I CCWGG 2 cut(s) 76, 340
BcnI CCSGG 2 cut(s) 311, 312
BisI GCNGC 2 cut(s) 84, 91
BlsI GCNGC 2 cut(s) 85, 92
Bme1390I CCNGG 4 cut(s) 76, 311, 312, 340
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 76, 311, 312, 340
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 311, 312
BsaJI CCNNGG 3 cut(s) 252, 309, 310
BsaWI WCCGGW 1 cut(s) 52
BseBI CCWGG 2 cut(s) 76, 340
BseDI CCNNGG 3 cut(s) 252, 309, 310
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 77, 95
BseYI CCCAGC 1 cut(s) 346
BshFI GGCC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 53, 311
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 1 cut(s) 71
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 252, 309, 310
BssMI GATC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 76, 340
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 76, 340
BstSCI CCNGG 4 cut(s) 74, 309, 310, 338
BstV1I GCAGC 2 cut(s) 77, 95
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 105
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 313
Cfr9I CCCGGG 1 cut(s) 310
CviAII CATG 3 cut(s) 26, 67, 179
CviJI RGCY 5 cut(s) 5, 86, 115, 315, 346
CviKI_1 RGCY 5 cut(s) 5, 86, 115, 315, 346
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 74, 338
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 29, 70, 182
FaiI YATR 5 cut(s) 27, 36, 68, 180, 278
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 3 cut(s) 25, 66, 178
Fnu4HI GCNGC 2 cut(s) 84, 91
Fsp4HI GCNGC 2 cut(s) 84, 91
GluI GCNGC 2 cut(s) 84, 91
GsaI CCCAGC 1 cut(s) 350
HaeIII GGCC 1 cut(s) 315
HapII CCGG 2 cut(s) 53, 311
Hin1II CATG 3 cut(s) 29, 70, 182
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 47, 124, 185
HpaII CCGG 2 cut(s) 53, 311
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 60, 226
HpyCH4V TGCA 5 cut(s) 14, 38, 83, 93, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 60, 226
Hsp92II CATG 3 cut(s) 29, 70, 182
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 10, 157
LpnPI CCDG 9 cut(s) 61, 66, 88, 134, 324, 325, 332, 337, 352
Lsp1109I GCAGC 2 cut(s) 77, 95
MaeII ACGT 2 cut(s) 60, 226
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 3 cut(s) 171, 226, 240
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 71
MluCI AATT 2 cut(s) 15, 241
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 3 cut(s) 165, 197, 326
MseI TTAA 3 cut(s) 138, 147, 164
MspI CCGG 2 cut(s) 53, 311
MspR9I CCNGG 4 cut(s) 76, 311, 312, 340
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 2 cut(s) 76, 340
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 2 cut(s) 311, 312
NdeII GATC 1 cut(s) 71
NlaIII CATG 3 cut(s) 29, 70, 182
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 327
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 47, 185
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 2 cut(s) 85, 92
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 74, 338
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 74, 338
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 71
SaqAI TTAA 3 cut(s) 138, 147, 164
SatI GCNGC 2 cut(s) 84, 91
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 4 cut(s) 76, 311, 312, 340
SetI ASST 7 cut(s) 63, 88, 117, 123, 229, 341, 348
SmaI CCCGGG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 15, 241
SspI AATATT 1 cut(s) 210
StyD4I CCNGG 4 cut(s) 74, 309, 310, 338
StyI CCWWGG 1 cut(s) 252
TaiI ACGT 2 cut(s) 63, 229
TaqI TCGA 2 cut(s) 157, 188
TasI AATT 2 cut(s) 15, 241
TfiI GAWTC 2 cut(s) 47, 185
Tru1I TTAA 3 cut(s) 138, 147, 164
Tru9I TTAA 3 cut(s) 138, 147, 164
TseI GCWGC 2 cut(s) 83, 90
TspDTI ATGAA 3 cut(s) 55, 198, 265
TspMI CCCGGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 241
XmaI CCCGGG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.