pycom14g10420

Glucomannan 4-beta-mannosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
13075557 .. 13076329
773 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGCAGATTCAGAATTCAGAAATTCCACATTCACATTGCTCACATTTCATACAAAAGCAAGAGAGAGATAGATCTGAACAACCAGTTTGTTCATTAGTATCTTTGTCTCGTTCTTTTCTAGAGAGAGAGGAAAGAGAGTCTGAAGTGGGTACAATGGCTGATACCACAACCCAAATTCTGATACCAAAAACGTTTCAGATAGGGACATATGAATTTGCAGGGCAAATTGGGCTGATATGGGAGCTAATCAAGGCGCCATTGATAGTCCCTCTGCTCACAGTTGGGGTCTATGTCTCATTGGCCATGTCTCTCATGCTCTTCTTTGAGAGGGTTTATATGGGAGTAGTCATCGTTCTCGTCAAACTCTTCTGGAAAAAACCAAAGCAACGCTACAAATACGAGCCCATTCAGGACGACCTTGAACTGGGAAGCTCCAATTTTCCTCCTGTTCTCATCCAAATCCCCATGTTCAATGAAAGAGAGGTATATTCTTACACACATATATGTCATATATATGCTTGTTTTTGTTGCTATCAAATTCTCTTTGTTTTTTGCCATTTTTATTTTCTGGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

193

Amino Acids

22.45

Weight (kDa)

6.06

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AclI AACGTT 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 5 cut(s) 13, 21, 174, 212, 537
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 2 cut(s) 422, 472
AluBI AGCT 2 cut(s) 244, 432
AluI AGCT 2 cut(s) 244, 432
Alw26I GTCTC 3 cut(s) 111, 298, 312
AoxI GGCC 1 cut(s) 300
ApoI RAATTY 5 cut(s) 13, 21, 174, 212, 537
AspLEI GCGC 1 cut(s) 256
BalI TGGCCA 1 cut(s) 302
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 111, 298, 312
BfaI CTAG 1 cut(s) 119
BfoI RGCGCY 1 cut(s) 257
BglII AGATCT 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 83, 429
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 83, 429
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 253
BslFI GGGAC 2 cut(s) 217, 251
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 3 cut(s) 111, 298, 312
BsmFI GGGAC 2 cut(s) 217, 251
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 71
BspANI GGCC 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 83, 429
BssMI GATC 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 323, 371
BstACI GRCGYC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 3 cut(s) 111, 298, 312
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 453
CfoI GCGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 150
CviAII CATG 3 cut(s) 304, 313, 466
CviJI RGCY 6 cut(s) 158, 232, 244, 302, 403, 432
CviKI_1 RGCY 6 cut(s) 158, 232, 244, 302, 403, 432
CviQI GTAC 1 cut(s) 150
DinI GGCGCC 1 cut(s) 255
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 323, 371
EarI CTCTTC 2 cut(s) 323, 371
Eco24I GRGCYC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 405
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
FaeI CATG 3 cut(s) 307, 316, 469
FaqI GGGAC 2 cut(s) 217, 251
FatI CATG 3 cut(s) 303, 312, 465
FauNDI CATATG 1 cut(s) 208
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 405
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 302
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 3 cut(s) 307, 316, 469
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 2 cut(s) 7, 137
Hpy188I TCNGA 6 cut(s) 12, 19, 76, 142, 180, 198
Hpy188III TCNNGA 3 cut(s) 119, 370, 410
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 4, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 3 cut(s) 307, 316, 469
HspAI GCGC 1 cut(s) 254
KasI GGCGCC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 71
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 2 cut(s) 241, 437
LpnPI CCDG 7 cut(s) 96, 204, 355, 395, 410, 459, 554
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 2 cut(s) 310, 358
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 7 cut(s) 13, 21, 174, 212, 225, 436, 537
MluNI TGGCCA 1 cut(s) 302
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 5 cut(s) 121, 279, 321, 453, 475
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MslI CAYNNNNRTG 2 cut(s) 502, 513
Msp20I TGGCCA 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 254
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 71
NlaIII CATG 3 cut(s) 307, 316, 469
NlaIV GGNNCC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 145
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 145
Psp1406I AACGTT 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 255
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 2 cut(s) 502, 513
SapI GCTCTTC 1 cut(s) 323
Sau3AI GATC 1 cut(s) 71
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 405
SetI ASST 5 cut(s) 194, 246, 420, 434, 486
SfoI GGCGCC 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 502, 513
Sse9I AATT 7 cut(s) 13, 21, 174, 212, 225, 436, 537
SspDI GGCGCC 1 cut(s) 253
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 194
TasI AATT 7 cut(s) 13, 21, 174, 212, 225, 436, 537
TfiI GAWTC 1 cut(s) 7
TspDTI ATGAA 4 cut(s) 37, 81, 225, 489
XapI RAATTY 5 cut(s) 13, 21, 174, 212, 537
XbaI TCTAGA 1 cut(s) 118
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.