Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13383016 .. 13383782

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATCCGGAGAGGCTCCTGTTTGGCGAACTAGAACTCAGCCATACACCCAACAGGGCCAACACTAACAGAAACCAGATATACCACAACGCCGTCGTATCGAGTCCTGTGCCAGAACATCAACCTTCAGCTATGGCCATGGCAGCTACTCCGGCGTGCGCCTTCTCAATCACTACCGCCACAATCACCAAGCCACTCTCCCGCCCTCTTCCTTGCTCCCACCTCCCCGCCCTAAACCCATACTATCTTCAACCCTCGGCTCCTCTGTCTCTCCGAACCCCCAAAACGCCACGCAGGCCAGTCTTTTGCGCCTCTGCGAGCACGGCCTTCGAGGTCGACCAAGCTCCGGCTTCCGCCACTTCGTCCAAGCTCTTGCCTTTTCGGGTCGGGCACGGGTTCGACCTGCACAGGCTGGAGCCCGGGTACCCTCTGATCGATCGGCGGCATCGACATACCTCACGACAGAGGCTGCGAGGCGCATTCCGACGGGGATGTGTTGCTTCATTGTGTGGTGGATGCGATATTGGGGGCTTTGGGGCTTCCGGATATCGGGCAGATATTTCCCGATTCGGATCCGAAGTGGAGGGGTGCAGCTTCATCCGTGTTCATCAAAGAAGCTGTAAGTTATCCTCCTCCTCGTCCTTGTTCTTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015994 GO:0015995 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

YgbB

Protein Analysis

220

Amino Acids

23.91

Weight (kDa)

9.73

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	336
AccIII	TCCGGA	2 cut(s)	7, 542
AciI	CCGC	5 cut(s)	177, 202, 228, 354, 442
AclWI	GGATC	3 cut(s)	12, 567, 580
AcoI	YGGCCR	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	346, 549
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	6 cut(s)	131, 146, 344, 370, 594, 618
AluI	AGCT	6 cut(s)	131, 146, 344, 370, 594, 618
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	12, 567, 580
AlwNI	CAGNNNCTG	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	419
Aor13HI	TCCGGA	2 cut(s)	7, 542
AoxI	GGCC	4 cut(s)	57, 135, 296, 324
ApeKI	GCWGC	3 cut(s)	143, 469, 591
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	3 cut(s)	161, 311, 479
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	2 cut(s)	420, 421
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	2 cut(s)	4, 572
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	155, 456, 603
BceAI	ACGGC	2 cut(s)	77, 339
BcgI	CGANNNNNNTGC	4 cut(s)	91, 125, 310, 344
BcnI	CCSGG	2 cut(s)	420, 421
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	4 cut(s)	144, 443, 470, 592
BlsI	GCNGC	4 cut(s)	145, 444, 471, 593
Bme1390I	CCNGG	2 cut(s)	420, 421
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	6 cut(s)	6, 17, 261, 417, 425, 574
BmrFI	CCNGG	2 cut(s)	420, 421
BmsI	GCATC	2 cut(s)	454, 506
BpmI	CTGGAG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	420, 421
Bsa29I	ATCGAT	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	571
BsaJI	CCNNGG	3 cut(s)	138, 255, 419
BsaWI	WCCGGW	2 cut(s)	7, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 549
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	571
BseAI	TCCGGA	2 cut(s)	7, 542
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	138, 255, 419
BseGI	GGATG	3 cut(s)	497, 521, 597
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	346, 549
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	3 cut(s)	252, 622, 625
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	155, 456, 603
BsgI	GTGCAG	2 cut(s)	389, 610
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	59, 137, 298, 326
BshNI	GGYRCC	1 cut(s)	423
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	5 cut(s)	8, 152, 347, 420, 543
BslI	CCNNNNNNNGG	2 cut(s)	346, 549
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	59, 137, 298, 326
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	323, 393, 420
Bsp13I	TCCGGA	2 cut(s)	7, 542
Bsp143I	GATC	4 cut(s)	4, 432, 436, 572
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	5 cut(s)	177, 202, 228, 354, 442
BspANI	GGCC	4 cut(s)	59, 137, 298, 326
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	435
BspEI	TCCGGA	2 cut(s)	7, 542
BspLI	GGNNCC	6 cut(s)	6, 17, 261, 417, 425, 574
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	12, 567, 580
BspT107I	GGYRCC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	138, 255, 419
BssMI	GATC	4 cut(s)	4, 432, 436, 572
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	654
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	157, 296, 319
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	497, 521, 597
BstHHI	GCGC	3 cut(s)	161, 311, 479
BstKTI	GATC	4 cut(s)	7, 435, 439, 575
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	4, 432, 436, 572
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 295, 323
BstSCI	CCNGG	2 cut(s)	418, 419
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	155, 456, 603
BstX2I	RGATCY	2 cut(s)	4, 572
BstYI	RGATCY	2 cut(s)	4, 572
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	59, 137, 298, 326
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	497, 521, 597
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	3 cut(s)	157, 296, 319
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	3 cut(s)	161, 311, 479
Cfr13I	GGNCC	1 cut(s)	57
Cfr9I	CCCGGG	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	4 cut(s)	6, 434, 438, 574
DpnII	GATC	4 cut(s)	4, 432, 436, 572
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	45, 82, 134, 140, 241, 453
FatI	CATG	1 cut(s)	138
FauI	CCCGC	2 cut(s)	209, 235
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	144, 443, 470, 592
FokI	GGATG	3 cut(s)	504, 528, 584
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	144, 443, 470, 592
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	3 cut(s)	160, 310, 478
GluI	GCNGC	4 cut(s)	144, 443, 470, 592
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	59, 137, 298, 326
HapII	CCGG	5 cut(s)	8, 152, 347, 420, 543
HhaI	GCGC	3 cut(s)	161, 311, 479
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	3 cut(s)	159, 309, 477
HinP1I	GCGC	3 cut(s)	159, 309, 477
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	103, 567
HpaII	CCGG	5 cut(s)	8, 152, 347, 420, 543
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	5 cut(s)	275, 432, 485, 572, 577
Hpy188III	TCNNGA	4 cut(s)	8, 459, 543, 564
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	98, 489
HpyAV	CCTTC	3 cut(s)	135, 172, 337
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	406, 591
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 295, 323
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	3 cut(s)	159, 309, 477
Kpn2I	TCCGGA	2 cut(s)	7, 542
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	4, 432, 436, 572
LmnI	GCTCC	5 cut(s)	21, 221, 265, 349, 415
Lsp1109I	GCAGC	3 cut(s)	155, 456, 603
LweI	GCATC	2 cut(s)	454, 506
MaeI	CTAG	1 cut(s)	32
MalI	GATC	4 cut(s)	6, 434, 438, 574
MboI	GATC	4 cut(s)	4, 432, 436, 572
MboII	GAAGA	2 cut(s)	200, 239
MflI	RGATCY	2 cut(s)	4, 572
MhlI	GDGCHC	3 cut(s)	323, 393, 420
MlsI	TGGCCA	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	508
Mox20I	TGGCCA	1 cut(s)	137
MroI	TCCGGA	2 cut(s)	7, 542
MscI	TGGCCA	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	5 cut(s)	8, 152, 347, 420, 543
MspR9I	CCNGG	2 cut(s)	420, 421
Mva1269I	GAATGC	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 295, 323
NciI	CCSGG	2 cut(s)	420, 421
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	4, 432, 436, 572
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	6 cut(s)	6, 17, 261, 417, 425, 574
NmeAIII	GCCGAG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	567
PkrI	GCNGC	4 cut(s)	145, 444, 471, 593
Ple19I	CGATCG	1 cut(s)	439
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspN4I	GGNNCC	6 cut(s)	6, 17, 261, 417, 425, 574
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	4, 572
PvuI	CGATCG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	335
SatI	GCNGC	4 cut(s)	144, 443, 470, 592
Sau3AI	GATC	4 cut(s)	4, 432, 436, 572
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	420, 421
SduI	GDGCHC	3 cut(s)	323, 393, 420
SfaNI	GCATC	2 cut(s)	454, 506
SmaI	CCCGGG	1 cut(s)	421
SsiI	CCGC	5 cut(s)	177, 202, 228, 354, 442
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	418, 419
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	654
TaqI	TCGA	6 cut(s)	101, 330, 336, 399, 435, 448
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	1 cut(s)	567
TseI	GCWGC	3 cut(s)	143, 469, 591
TspDTI	ATGAA	3 cut(s)	492, 586, 596
TspGWI	ACGGA	1 cut(s)	590
TspMI	CCCGGG	1 cut(s)	419
XmaI	CCCGGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.