Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13671134 .. 13673424

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTTCTTCGGCAGCCCCAAAAATCCCACGAATCTCAAACTGACCTGCAACGCAACTTCCCCAAATCCACCAAAATATCGTCTCATTTTCTTTTCGTTTTCGACGTCGGTGATGATGAGCAGCTGTTCCTTATTAACACTCCCATCATCGTCGTCGTCGTTAATCTTTATCTTCATCTCGTAGTCTCTTCCGGTCAATTAATTTCGTTTCTTAATCCCAAAAAAAATCAGCAAAAAAAGTCCAGAAAAAAAGAGGATCGGAAAATGTACGTAACGGCGGTGCGACCGACGGATCTGAATCGGAATACGGAGTGGTTCACGTACCCCGGAGTCTGGACGACCTACATTCTGATGGTGTTCTTCTCGTGGCTCACCGTCCTCTGCCTCTTCTCTTGCTCTCCCGGCATGGCCTGGACCGTCGTCCACCTGTCCCACTTCCTCGTTACTTATCACTTTTTTCACTGGAAGAAAGGAACACCATTTGCAGATGACCAGGGTATCTACAACGCACTGACATGGTGGGAGCAAATAGACAATGGCAACCAGCTCACTCGAAACAGAAAGTTTCTAACTGTCGTGCCTGTTGTGTTGTACTTAATAGCCTCTCACACGACAGACTATCAAAATCCAATGCTCATCTTTAACACACTAGCAGTTTTTGTGTTGGTAGTTGCAAAGTTCCCAAACATGCACAAGGTTCGTATATTCGGAATCAATGCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

243

Amino Acids

28.32

Weight (kDa)

9.49

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	100 - 234	4.4e-51	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	54
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	2 cut(s)	264, 300
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	3 cut(s)	269, 323, 593
AfiI	CCNNNNNNNGG	1 cut(s)	333
AjnI	CCWGG	2 cut(s)	410, 492
AluBI	AGCT	2 cut(s)	124, 547
AluI	AGCT	2 cut(s)	124, 547
Alw26I	GTCTC	2 cut(s)	87, 190
AlwI	GGATC	2 cut(s)	264, 300
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	13, 121
AseI	ATTAAT	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	2 cut(s)	327, 402
AsuHPI	GGTGA	2 cut(s)	122, 364
AvaII	GGWCC	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	481, 514
BauI	CACGAG	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	25, 133
BccI	CCATC	2 cut(s)	152, 346
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	2 cut(s)	412, 494
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	2 cut(s)	327, 402
BcoDI	GTCTC	2 cut(s)	87, 190
BfaI	CTAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	14, 122
BlsI	GCNGC	2 cut(s)	15, 123
Bme1390I	CCNGG	4 cut(s)	327, 402, 412, 494
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	4 cut(s)	327, 402, 412, 494
BoxI	GACNNNNGTC	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	327, 402
BsaAI	YACGTR	2 cut(s)	271, 321
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	325, 493
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	412, 494
BseDI	CCNNGG	2 cut(s)	325, 493
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	25, 133
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	192, 327, 402
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	2 cut(s)	87, 190
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	256, 292, 721
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	264, 300
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	325, 493
BssMI	GATC	3 cut(s)	256, 292, 721
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	364
Bst2UI	CCWGG	2 cut(s)	412, 494
Bst4CI	ACNGT	3 cut(s)	376, 418, 574
Bst6I	CTCTTC	2 cut(s)	193, 392
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	2 cut(s)	271, 321
BstKTI	GATC	3 cut(s)	259, 295, 724
BstMAI	GTCTC	2 cut(s)	87, 190
BstMBI	GATC	3 cut(s)	256, 292, 721
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	412, 494
BstNSI	RCATGY	1 cut(s)	691
BstPAI	GACNNNNGTC	1 cut(s)	419
BstSCI	CCNGG	4 cut(s)	325, 400, 410, 492
BstSNI	TACGTA	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	25, 133
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	460, 509, 724
BveI	ACCTGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	268, 322, 592
CviAII	CATG	3 cut(s)	406, 516, 688
CviJI	RGCY	6 cut(s)	16, 124, 370, 410, 547, 602
CviKI_1	RGCY	6 cut(s)	16, 124, 370, 410, 547, 602
CviQI	GTAC	3 cut(s)	268, 322, 592
DpnI	GATC	3 cut(s)	258, 294, 723
DpnII	GATC	3 cut(s)	256, 292, 721
Eam1104I	CTCTTC	2 cut(s)	193, 392
EarI	CTCTTC	2 cut(s)	193, 392
Eco105I	TACGTA	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	410, 492
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	3 cut(s)	409, 519, 691
FaiI	YATR	4 cut(s)	407, 517, 689, 704
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	405, 515, 687
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	2 cut(s)	14, 122
Fsp4HI	GCNGC	2 cut(s)	14, 122
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	2 cut(s)	14, 122
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	192, 327, 402
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	409, 519, 691
HinfI	GANTC	4 cut(s)	32, 298, 330, 711
HpaII	CCGG	3 cut(s)	192, 327, 402
HphI	GGTGA	2 cut(s)	122, 364
Hpy166II	GTNNAC	2 cut(s)	318, 424
Hpy188I	TCNGA	5 cut(s)	261, 297, 303, 351, 710
Hpy188III	TCNNGA	2 cut(s)	243, 334
Hpy8I	GTNNAC	2 cut(s)	318, 424
Hpy99I	CGWCG	7 cut(s)	107, 110, 155, 158, 161, 292, 422
HpyCH4III	ACNGT	3 cut(s)	376, 418, 574
HpyCH4IV	ACGT	3 cut(s)	105, 270, 320
HpyCH4V	TGCA	4 cut(s)	49, 485, 674, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpySE526I	ACGT	3 cut(s)	105, 270, 320
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	409, 519, 691
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	256, 292, 721
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	25, 133
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	3 cut(s)	105, 270, 320
MaeIII	GTNAC	2 cut(s)	271, 442
MalI	GATC	3 cut(s)	258, 294, 723
MboI	GATC	3 cut(s)	256, 292, 721
MboII	GAAGA	5 cut(s)	164, 180, 352, 379, 478
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	2 cut(s)	197, 201
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	247, 389, 395, 449, 613
MseI	TTAA	6 cut(s)	135, 162, 200, 213, 596, 642
MslI	CAYNNNNRTG	2 cut(s)	350, 514
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	3 cut(s)	192, 327, 402
MspR9I	CCNGG	4 cut(s)	327, 402, 412, 494
MvaI	CCWGG	2 cut(s)	412, 494
MwoI	GCNNNNNNNGC	1 cut(s)	402
NciI	CCSGG	2 cut(s)	327, 402
NdeII	GATC	3 cut(s)	256, 292, 721
NlaIII	CATG	3 cut(s)	409, 519, 691
NspI	RCATGY	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 156
PfeI	GAWTC	3 cut(s)	32, 298, 711
PkrI	GCNGC	2 cut(s)	15, 123
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	2 cut(s)	271, 321
PshAI	GACNNNNGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	410, 492
PspGI	CCWGG	2 cut(s)	410, 492
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	3 cut(s)	269, 323, 593
RsaNI	GTAC	3 cut(s)	268, 322, 592
RseI	CAYNNNNRTG	2 cut(s)	350, 514
SaqAI	TTAA	6 cut(s)	135, 162, 200, 213, 596, 642
SatI	GCNGC	2 cut(s)	14, 122
Sau3AI	GATC	3 cut(s)	256, 292, 721
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	4 cut(s)	327, 402, 412, 494
SetI	ASST	9 cut(s)	48, 108, 126, 273, 323, 344, 429, 549, 699
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	350, 514
SnaBI	TACGTA	1 cut(s)	271
Sse9I	AATT	2 cut(s)	197, 201
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	4 cut(s)	325, 400, 410, 492
TaaI	ACNGT	3 cut(s)	376, 418, 574
TaiI	ACGT	3 cut(s)	108, 273, 323
TaqI	TCGA	2 cut(s)	102, 553
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	197, 201
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	32, 298, 711
Tru1I	TTAA	6 cut(s)	135, 162, 200, 213, 596, 642
Tru9I	TTAA	6 cut(s)	135, 162, 200, 213, 596, 642
TscAI	CASTG	2 cut(s)	467, 516
TseI	GCWGC	2 cut(s)	13, 121
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	2 cut(s)	305, 323
TspRI	CASTG	2 cut(s)	467, 516
VpaK11BI	GGWCC	1 cut(s)	414
VspI	ATTAAT	1 cut(s)	200
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	1 cut(s)	650
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.