pycom14g11550

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
14641251 .. 14641543
293 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGCGTTCTGTGTTGGTATTAAGATGCAGAAATGGTCATGCAAAACCCTAACGACAGTGTTAGTCCTTGTACACTGCATCAAGATCTTGGTGATAGTGGCACTTAGCCATCTGGGAATTCTCCAACCTTTCCAACAGATGACTGAACCAACTACTGACTCCGTGGAAAATCATCCCACCAATTCAATACTTGTGTTTGACCGTTTGTTCTCGTCGATAGCCGCGGTTGGTAGAGTTTGGTCAAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.25

Weight (kDa)

8.61

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 2 cut(s) 222, 224
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 186
ApoI RAATTY 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 103
BccI CCATC 1 cut(s) 117
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmsI GCATC 2 cut(s) 15, 87
BsaJI CCNNGG 2 cut(s) 162, 222
BseDI CCNNGG 2 cut(s) 162, 222
BseGI GGATG 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 2 cut(s) 222, 224
BspFNI CGCG 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 162, 222
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 58, 203
BstAUI TGTACA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 2 cut(s) 162, 222
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstUI CGCG 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtgI CCRYGG 2 cut(s) 162, 222
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 63, 73
Cfr42I CCGCGG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 39
CviJI RGCY 2 cut(s) 108, 221
CviKI_1 RGCY 2 cut(s) 108, 221
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 117
FaeI CATG 1 cut(s) 42
FaiI YATR 1 cut(s) 40
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 42
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 58, 203
HpyCH4V TGCA 3 cut(s) 28, 42, 78
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 42
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 1 cut(s) 98
LweI GCATC 2 cut(s) 15, 87
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MflI RGATCY 1 cut(s) 84
MluCI AATT 2 cut(s) 117, 181
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 148, 157
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 224
MvnI CGCG 1 cut(s) 224
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 42
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacII CCGCGG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 152
SetI ASST 1 cut(s) 130
SfaNI GCATC 2 cut(s) 15, 87
Sfr303I CCGCGG 1 cut(s) 225
SgeI CNNG 9 cut(s) 51, 80, 94, 100, 125, 175, 203, 223, 235
SgrBI CCGCGG 1 cut(s) 225
Sse9I AATT 2 cut(s) 117, 181
SsiI CCGC 2 cut(s) 222, 224
TaaI ACNGT 2 cut(s) 58, 203
TaqI TCGA 1 cut(s) 215
TasI AATT 2 cut(s) 117, 181
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 63, 80
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 63, 80
XapI RAATTY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.