Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15294266 .. 15295257

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCGCCCTCGCCGCCGCGATTTCCTTATCCGACCCGGAAAAGCGTCGCCGCCTCCAGGCCGAAGAAGTCGGCGGTGGCGACAAGGAGGTGGTGAAGGACTACTTCAACAAGTCTGGATTCGAGCGATGGAAGAAGATATACAGAGAGACGGATGACGTCAACCGAGTTCAGAGGGACATCAGGCTCGGGCACTCCAAGACCGTTGAGAATGTGATAAAGATGTTGACCGATGAGGGCCCACTTCAGGGGGTCTCTGTGTGCGACGCCGGGTGTGGGACTGGTTGGCGATTCCGTTGGCGAAGGAAGGGGTGGTTGTCACGGCTGCTGATATTTCAGCTGCCATGGTTGCAGAGGCTGAGAAGCAGGACCAGTACTGCCAAAATTCTAAGTGAAGGATTTAGAGAGCTTGGATGGGAAGTACGACACGTTGGTCTGTCTAGATGTTTTGACTCATTACCCGCAGAGCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

159

Amino Acids

18.16

Weight (kDa)

9.75

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	432
AatII	GACGTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	20
AciI	CCGC	6 cut(s)	6, 15, 18, 52, 75, 462
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	2 cut(s)	159, 267
AfaI	GTAC	2 cut(s)	376, 423
AfiI	CCNNNNNNNGG	4 cut(s)	58, 247, 248, 276
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	340, 409
AluI	AGCT	2 cut(s)	340, 409
Alw26I	GTCTC	2 cut(s)	143, 259
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	3, 60, 238
ApaI	GGGCCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	325, 340
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	3 cut(s)	238, 239, 369
AsuC2I	CCSGG	2 cut(s)	38, 271
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	195, 242
BanII	GRGCYC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BbvI	GCAGC	2 cut(s)	312, 327
BccI	CCATC	2 cut(s)	123, 408
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	38, 271
BcoDI	GTCTC	2 cut(s)	143, 259
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	6 cut(s)	6, 15, 18, 52, 326, 341
BlsI	GCNGC	6 cut(s)	7, 16, 19, 53, 327, 342
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	38, 59, 271
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	238, 239, 369
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	3 cut(s)	38, 59, 271
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	38, 271
BsaHI	GRCGYC	2 cut(s)	159, 267
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 247, 248, 276
Bse1I	ACTGG	2 cut(s)	286, 372
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	2 cut(s)	160, 419
BseLI	CCNNNNNNNGG	4 cut(s)	58, 247, 248, 276
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	286, 372
BseSI	GKGCMC	2 cut(s)	195, 242
BseXI	GCAGC	2 cut(s)	312, 327
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	5, 62, 240
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	38, 270
BslFI	GGGAC	2 cut(s)	191, 292
BslI	CCNNNNNNNGG	4 cut(s)	58, 247, 248, 276
BsmAI	GTCTC	2 cut(s)	143, 259
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	191, 292
BsnI	GGCC	3 cut(s)	5, 62, 240
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	188
Bsp120I	GGGCCC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	195, 242
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	6 cut(s)	6, 15, 18, 52, 75, 462
BspANI	GGCC	3 cut(s)	5, 62, 240
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	286, 372
BssECI	CCNNGG	1 cut(s)	344
BssNI	GRCGYC	2 cut(s)	159, 267
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	2 cut(s)	159, 267
BstDEI	CTNAG	2 cut(s)	359, 389
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	160, 419
BstFNI	CGCG	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	143, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 349
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	36, 57, 269
BstSLI	GKGCMC	2 cut(s)	195, 242
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	312, 327
BsuRI	GGCC	3 cut(s)	5, 62, 240
BtgI	CCRYGG	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	160, 419
CaiI	CAGNNNCTG	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	238, 239, 369
CseI	GACGC	2 cut(s)	35, 275
Csp6I	GTAC	2 cut(s)	375, 422
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	9 cut(s)	5, 62, 187, 240, 325, 340, 358, 409, 474
CviKI_1	RGCY	9 cut(s)	5, 62, 187, 240, 325, 340, 358, 409, 474
CviQI	GTAC	2 cut(s)	375, 422
DdeI	CTNAG	2 cut(s)	359, 389
DrdI	GACNNNNNNGTC	1 cut(s)	432
DseDI	GACNNNNNNGTC	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	1 cut(s)	348
FaiI	YATR	2 cut(s)	142, 346
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	2 cut(s)	191, 292
FatI	CATG	1 cut(s)	344
FauI	CCCGC	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	6, 15, 18, 52, 326, 341
FokI	GGATG	2 cut(s)	167, 426
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	6 cut(s)	6, 15, 18, 52, 326, 341
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	6 cut(s)	6, 15, 18, 52, 326, 341
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	5, 62, 240
HapII	CCGG	2 cut(s)	38, 270
HgaI	GACGC	2 cut(s)	35, 275
Hin1I	GRCGYC	2 cut(s)	159, 267
Hin1II	CATG	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	163, 228
HindII	GTYRAC	2 cut(s)	163, 228
HinfI	GANTC	3 cut(s)	120, 291, 452
HpaII	CCGG	2 cut(s)	38, 270
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	163, 228
Hpy188I	TCNGA	2 cut(s)	34, 174
Hpy188III	TCNNGA	2 cut(s)	117, 441
Hpy8I	GTNNAC	2 cut(s)	163, 228
Hpy99I	CGWCG	2 cut(s)	51, 269
HpyAV	CCTTC	4 cut(s)	91, 297, 301, 389
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	159, 429
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 349
HpyF3I	CTNAG	2 cut(s)	359, 389
HpySE526I	ACGT	2 cut(s)	159, 429
Hsp92I	GRCGYC	2 cut(s)	159, 267
Hsp92II	CATG	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	312, 327
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	159, 429
MaeIII	GTNAC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	77, 145, 148
MhlI	GDGCHC	2 cut(s)	195, 242
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	20, 65, 82, 168, 229, 348
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	2 cut(s)	38, 270
MspR9I	CCNGG	3 cut(s)	38, 59, 271
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 349
NciI	CCSGG	2 cut(s)	38, 271
NcoI	CCATGG	1 cut(s)	344
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	120, 291
PkrI	GCNGC	6 cut(s)	7, 16, 19, 53, 327, 342
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	240
PspOMI	GGGCCC	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	238, 239, 369
PstNI	CAGNNNCTG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	376, 423
RsaNI	GTAC	2 cut(s)	375, 422
SatI	GCNGC	6 cut(s)	6, 15, 18, 52, 326, 341
Sau96I	GGNCC	3 cut(s)	238, 239, 369
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	38, 59, 271
SduI	GDGCHC	2 cut(s)	195, 242
SetI	ASST	5 cut(s)	93, 162, 342, 411, 432
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	6 cut(s)	6, 15, 18, 52, 75, 462
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	36, 57, 269
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	162, 432
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	384
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	4 cut(s)	8, 17, 20, 54
TfiI	GAWTC	2 cut(s)	120, 291
TseFI	GTSAC	1 cut(s)	318
TseI	GCWGC	2 cut(s)	325, 340
Tsp45I	GTSAC	1 cut(s)	318
TspGWI	ACGGA	2 cut(s)	167, 284
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	384
XbaI	TCTAGA	1 cut(s)	440
XspI	CTAG	1 cut(s)	441
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.