pycom14g12750

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
15750604 .. 15751019
416 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGTCTGAACTTCGAAAATTATGTATTCTGCTTCCTTCAAAGTTGGCGCCAAGTGAGTTCGCACAAGAATGCACAAAGGCAATTGTGGACGGTGCTTGCCGTGGAGACATGTATCTGACAGAGGCATCGTGGGCCACGTTCGGATTTTGGTTGAGGGTTTTCTGTCCCGAACTACTCGAGAAGCTTTTCCAACTAATAGTGGAAACCAAGAAGATGGCAGCCACTCCAAATAAGAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

6.23

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 39
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 13
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 134, 184, 221
CviKI_1 RGCY 3 cut(s) 134, 184, 221
DinI GGCGCC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 22, 110
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 7, 117, 143
Hpy188III TCNNGA 2 cut(s) 167, 178
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 47
KasI GGCGCC 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 134
MaeII ACGT 1 cut(s) 137
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 1 cut(s) 81
MluCI AATT 2 cut(s) 17, 81
Mly113I GGCGCC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 2 cut(s) 115, 147
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 67
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 131
NarI GGCGCC 1 cut(s) 47
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 176
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PctI GAATGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 220
PluTI GGCGCC 1 cut(s) 50
PscI ACATGT 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 67
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 132
SetI ASST 2 cut(s) 140, 186
SfaNI GCATC 1 cut(s) 134
SfoI GGCGCC 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 176
SfuI TTCGAA 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 17, 81
SspDI GGCGCC 1 cut(s) 46
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 13, 177
TasI AATT 2 cut(s) 17, 81
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseI GCWGC 1 cut(s) 218
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.