pycom14g12810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
15821182 .. 15824824
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGAACGCAATTCTGCTAACAGAGCATGAAAATCATTCTGTAATGCATGCATATATTGACAATTATCTCCAACAGGCTATCAGTATCACATGGTTAAAATTCAGTAGTGGTCATGGCCTCGCTTTTGCTGGTGGTGGACTGAAACTTGGGACACAAGATCAAACTTTTTCCCTTTCTGAGGGCTCTAAGTTCCCAGAGATCTGCATGTTCAATGATGTTTACGTTCGAACCGGCAATGAGACCATTGAGCACCTTCATGCTGCTATGGTGGAAAAGCGCACCGTTGTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

98

Amino Acids

10.81

Weight (kDa)

5.78

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 211
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 1 cut(s) 279
AsuII TTCGAA 1 cut(s) 226
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 233
BglII AGATCT 1 cut(s) 198
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 185, 252
Bsp143I GATC 2 cut(s) 157, 198
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 2 cut(s) 157, 198
Bst4CI ACNGT 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 177, 186
BstENI CCTNNNNNAGG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 160, 201
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 157, 198
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 50, 208
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 230
CviAII CATG 6 cut(s) 26, 47, 90, 113, 205, 257
CviJI RGCY 3 cut(s) 77, 117, 183
CviKI_1 RGCY 3 cut(s) 77, 117, 183
DdeI CTNAG 2 cut(s) 177, 186
DpnI GATC 2 cut(s) 159, 200
DpnII GATC 2 cut(s) 157, 198
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoT22I ATGCAT 2 cut(s) 48, 52
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 6 cut(s) 29, 50, 93, 116, 208, 260
FaiI YATR 9 cut(s) 27, 48, 52, 54, 91, 114, 206, 258, 266
FaqI GGGAC 1 cut(s) 163
FatI CATG 6 cut(s) 25, 46, 89, 112, 204, 256
Fnu4HI GCNGC 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 261
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 279
Hin1II CATG 6 cut(s) 29, 50, 93, 116, 208, 260
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 137, 220
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 137, 220
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 46, 50, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 177, 186
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 6 cut(s) 29, 50, 93, 116, 208, 260
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 157, 198
LpnPI CCDG 4 cut(s) 59, 114, 207, 244
Lsp1109I GCAGC 1 cut(s) 247
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 159, 200
MboI GATC 2 cut(s) 157, 198
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 185, 252
MluCI AATT 3 cut(s) 9, 61, 98
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 2 cut(s) 128, 172
Mph1103I ATGCAT 2 cut(s) 48, 52
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 157, 198
NlaIII CATG 6 cut(s) 29, 50, 93, 116, 208, 260
NsiI ATGCAT 2 cut(s) 48, 52
NspI RCATGY 2 cut(s) 50, 208
NspV TTCGAA 1 cut(s) 226
PaeI GCATGC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 157, 198
SduI GDGCHC 2 cut(s) 185, 252
SetI ASST 2 cut(s) 225, 255
SfuI TTCGAA 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 255
SphI GCATGC 1 cut(s) 50
Sse9I AATT 3 cut(s) 9, 61, 98
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 226
TasI AATT 3 cut(s) 9, 61, 98
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 17, 42, 245
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 98
XceI RCATGY 2 cut(s) 50, 208
Zsp2I ATGCAT 2 cut(s) 48, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.