Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16825679 .. 16825918

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCAAAATGGAAGATCGATCCCAAACTGTATGAAAATCCAGGGGAGTTTGAGCCAGAAAGGTTCTTGAATAGTGAGATAGATTATAAAGAGAATGACTTTCAGTTAATTTCATTTGGTGCTGGTTGGAGGTATGTCCGGGAATTCAATTTTCCATGGCTGTCAATGAGATTGCGTTGGCAAATATCGTGCACAAGTTTGACTCGGCGTTGCCTGGTGGAGCAAGCGGGGAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

80

Amino Acids

9.61

Weight (kDa)

7.77

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 44	9.2e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	70, 148
AjnI	CCWGG	2 cut(s)	40, 213
Alw21I	GWGCWC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	42, 215
BcnI	CCSGG	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	42, 140, 215
BmrFI	CCNGG	3 cut(s)	42, 140, 215
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	41, 155
BseBI	CCWGG	2 cut(s)	42, 215
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	41, 155
BseSI	GKGCMC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	15, 19
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	227
BspDI	ATCGAT	1 cut(s)	18
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	41, 155
BssMI	GATC	2 cut(s)	15, 19
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	42, 215
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	18, 22
BstMBI	GATC	2 cut(s)	15, 19
BstNI	CCWGG	2 cut(s)	42, 215
BstSCI	CCNGG	3 cut(s)	40, 138, 213
BstSLI	GKGCMC	1 cut(s)	194
Bsu15I	ATCGAT	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	18
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	2 cut(s)	55, 160
CviKI_1	RGCY	2 cut(s)	55, 160
DpnI	GATC	2 cut(s)	17, 21
DpnII	GATC	2 cut(s)	15, 19
Eco130I	CCWWGG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	40, 213
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	159
FaiI	YATR	4 cut(s)	33, 87, 135, 157
FatI	CATG	1 cut(s)	155
FauI	CCCGC	1 cut(s)	220
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	15, 19
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	27, 54, 69, 108, 152, 200, 227
MalI	GATC	2 cut(s)	17, 21
MboI	GATC	2 cut(s)	15, 19
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	3 cut(s)	108, 143, 148
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	123, 225
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	3 cut(s)	42, 140, 215
MvaI	CCWGG	2 cut(s)	42, 215
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	15, 19
NlaIII	CATG	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	138
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	40, 213
PspGI	CCWGG	2 cut(s)	40, 213
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	15, 19
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	42, 140, 215
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	2 cut(s)	65, 134
Sse9I	AATT	3 cut(s)	108, 143, 148
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	40, 138, 213
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	108, 143, 148
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	48, 102
VneI	GTGCAC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.