Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16957274 .. 16957812

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGCTTCTTCTGCACCAACCATGGCGCTGAGAGTCTTCTCCTCCTCGTGTTCCTCCTCCTCATCGTCCTCCGCTTCTTTCAAGCCCAATAAGTCACTCCCTTTCAAGTTCACCACTTTCCGGCCTCCTCCCCAGCCCACCCTCTTCAAATCCCTCAAATGCATCCAAACGCCGCCGTCTTCCAATCCCAACCCATTAAAGCATCCGCCGCCGCCTCCCCAAAACTCTAGCTCCACAGACGACTTGTCGTCGCTCAATGTGGGATTGCCGGGGGCGCAGAGGTCTAGGGTTAACACGTGGCATAATGTGCAGGTCAGTATGAAGAAAAAGACTAAGGCTTTGGTCGCCCAGCGGCAGGGTACGCCGCCGCTCGAGCCTTTCCCGTCGCTCGTCGTCACCGCCGATGGGTTTCGGGCAAAGGGCAGCTTCGCTGAGGCCCAGGTTAGCCAATGGATTGTGTTTCTGGTTGATTTGTATGATTATATTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

165

Amino Acids

17.75

Weight (kDa)

9.95

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	9 cut(s)	75, 176, 209, 212, 215, 355, 368, 371, 402
AcvI	CACGTG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	3 cut(s)	123, 358, 408
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	85, 109, 151
AhdI	GACNNNNNGTC	2 cut(s)	247, 250
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	234, 429
AluI	AGCT	2 cut(s)	234, 429
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	125, 438
ApeKI	GCWGC	1 cut(s)	426
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspLEI	GCGC	2 cut(s)	31, 280
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	106, 391
AvaI	CYCGRG	1 cut(s)	374
BauI	CACGAG	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	31, 174
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	2 cut(s)	231, 288
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	7 cut(s)	176, 212, 215, 356, 368, 371, 427
BlsI	GCNGC	7 cut(s)	177, 213, 216, 357, 369, 372, 428
Bme1390I	CCNGG	2 cut(s)	273, 443
BmeRI	GACNNNNNGTC	2 cut(s)	247, 250
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	2 cut(s)	273, 443
BmsI	GCATC	2 cut(s)	174, 214
BpiI	GAAGAC	2 cut(s)	31, 174
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	24, 272, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 358, 408
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	24, 272, 441
BseGI	GGATG	3 cut(s)	10, 165, 205
BseLI	CCNNNNNNNGG	3 cut(s)	123, 358, 408
BseMII	CTCAG	2 cut(s)	23, 426
BseRI	GAGGAG	5 cut(s)	34, 37, 49, 52, 120
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	2 cut(s)	135, 351
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	127, 440
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	124, 272
BslI	CCNNNNNNNGG	3 cut(s)	123, 358, 408
BsnI	GGCC	2 cut(s)	127, 440
BsoBI	CYCGRG	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	9 cut(s)	75, 176, 209, 212, 215, 355, 368, 371, 402
BspANI	GGCC	2 cut(s)	127, 440
BspCNI	CTCAG	2 cut(s)	24, 427
BspMI	ACCTGC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	24, 272, 441
BssSI	CACGAG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	32, 336, 435
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	10, 165, 205
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 280
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 211, 277, 310, 347, 364, 376
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	271, 441
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	2 cut(s)	31, 174
BsuRI	GGCC	2 cut(s)	127, 440
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	10, 165, 205
BveI	ACCTGC	1 cut(s)	304
CfoI	GCGC	2 cut(s)	31, 280
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	9 cut(s)	88, 127, 139, 234, 341, 379, 429, 440, 450
CviKI_1	RGCY	9 cut(s)	88, 127, 139, 234, 341, 379, 429, 440, 450
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	32, 336, 435
DriI	GACNNNNNGTC	2 cut(s)	247, 250
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	2 cut(s)	247, 250
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	24
Eco72I	CACGTG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	28
FaiI	YATR	5 cut(s)	26, 306, 323, 480, 486
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	7 cut(s)	176, 212, 215, 356, 368, 371, 427
FokI	GGATG	3 cut(s)	17, 152, 192
Fsp4HI	GCNGC	7 cut(s)	176, 212, 215, 356, 368, 371, 427
FspBI	CTAG	2 cut(s)	231, 288
GlaI	GCGC	2 cut(s)	30, 279
GluI	GCNGC	7 cut(s)	176, 212, 215, 356, 368, 371, 427
GsaI	CCCAGC	2 cut(s)	139, 355
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	127, 440
HapII	CCGG	2 cut(s)	124, 272
HhaI	GCGC	2 cut(s)	31, 280
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	29, 278
HinP1I	GCGC	2 cut(s)	29, 278
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	36
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	124, 272
HphI	GGTGA	2 cut(s)	106, 391
Hpy166II	GTNNAC	2 cut(s)	114, 295
Hpy8I	GTNNAC	2 cut(s)	114, 295
Hpy99I	CGWCG	3 cut(s)	256, 391, 398
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	17, 165, 313
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 211, 277, 310, 347, 364, 376
HpyF3I	CTNAG	3 cut(s)	32, 336, 435
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	29, 278
KspAI	GTTAAC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	137, 149, 285, 299, 344, 365, 428, 452, 455
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	2 cut(s)	174, 214
MaeI	CTAG	2 cut(s)	231, 288
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	96, 397
MbiI	CCGCTC	1 cut(s)	373
MboII	GAAGA	5 cut(s)	3, 31, 139, 174, 337
MlyI	GAGTC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	2 cut(s)	200, 294
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	2 cut(s)	124, 272
MspR9I	CCNGG	2 cut(s)	273, 443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	7 cut(s)	14, 211, 277, 310, 347, 364, 376
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	24
NlaIII	CATG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	96, 397
NsiI	ATGCAT	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PkrI	GCNGC	7 cut(s)	177, 213, 216, 357, 369, 372, 428
PleI	GAGTC	1 cut(s)	44
PmaCI	CACGTG	1 cut(s)	300
PmlI	CACGTG	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	441
PspCI	CACGTG	1 cut(s)	300
PspFI	CCCAGC	2 cut(s)	135, 351
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	374
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	200, 294
SatI	GCNGC	7 cut(s)	176, 212, 215, 356, 368, 371, 427
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	273, 443
SetI	ASST	6 cut(s)	236, 287, 302, 318, 431, 447
SfaNI	GCATC	2 cut(s)	174, 214
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	9 cut(s)	75, 176, 209, 212, 215, 355, 368, 371, 402
SspMI	CTAG	2 cut(s)	231, 288
StyD4I	CCNGG	2 cut(s)	271, 441
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	375
TauI	GCSGC	6 cut(s)	178, 214, 217, 358, 370, 373
Tru1I	TTAA	2 cut(s)	200, 294
Tru9I	TTAA	2 cut(s)	200, 294
TseFI	GTSAC	2 cut(s)	96, 397
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	2 cut(s)	96, 397
TspDTI	ATGAA	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	2 cut(s)	231, 288
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.