Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18224096 .. 18224575

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCTCCCGCCCAGAACCTCAAGCACCGGGTCTTCATCTGCCTGAATAAGCTCTCCGACCGTGACACTTACTCCCTCGCAGCTTCCGAACTCGAATCCATCGCCCGAACTCTCGACCCGGCATCCGTACCCGTTTTCCTCTCCTGCATCCAGACCACCGACGCCTCCGACAAGTCTCCTGTCCGCCGACAATGCGTCCACATGATCACCGTCCTTTCCGAAACCCACGGCGACTCGCTGTCCCCGCACCTCACCAAAATGCTCAACAGCATCACCAAGCGCCTCCGCGACCCGGACTCCGCTGTCCGATCCGCCTGCCAAACCGCCGTCGCTTCCCTCTCCTGCCATGTCACCAAGCCCTCTTCTTTCGGCTCTTTTCTGAAGCCGTTAACCGACGCGCTTTTCACGGAGCAGGACCCGAACTCGCAGATCGATCGGGTCGGCCCTCTGCCTGGCGTCGGGAATAGACTCCGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT

Protein Analysis

160

Amino Acids

17.31

Weight (kDa)

8.69

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	6 - 144	1.5e-56	TORTIFOLIA1 N-terminal
HEAT_ECM29	PF24492	30 - 133	2e-08	Proteasome adapter and scaffold protein ECM29, HEAT-repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccII	CGCG	3 cut(s)	288, 398, 474
AciI	CCGC	8 cut(s)	9, 184, 245, 286, 300, 312, 324, 472
AclWI	GGATC	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	2 cut(s)	162, 456
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	292, 452, 458
AhdI	GACNNNNNGTC	2 cut(s)	194, 238
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	2 cut(s)	52, 83
AluI	AGCT	2 cut(s)	52, 83
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	282, 400, 476
AspS9I	GGNCC	2 cut(s)	415, 443
AsuC2I	CCSGG	3 cut(s)	29, 119, 293
AsuHPI	GGTGA	4 cut(s)	199, 244, 265, 343
AvaII	GGWCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	3 cut(s)	244, 311, 370
BcgI	CGANNNNNNTGC	4 cut(s)	297, 331, 416, 450
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	3 cut(s)	29, 119, 293
BcoDI	GTCTC	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	283
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	4 cut(s)	29, 119, 293, 453
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	2 cut(s)	194, 238
BmgT120I	GGNCC	2 cut(s)	415, 443
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	4 cut(s)	29, 119, 293, 453
BmsI	GCATC	3 cut(s)	131, 156, 279
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	3 cut(s)	29, 119, 293
Bsa29I	ATCGAT	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	162, 456
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 452, 458
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	122, 147
BseLI	CCNNNNNNNGG	3 cut(s)	292, 452, 458
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	3 cut(s)	288, 398, 474
Bsh1285I	CGRYCG	2 cut(s)	61, 436
BshFI	GGCC	1 cut(s)	444
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	2 cut(s)	61, 436
BsiSI	CCGG	3 cut(s)	28, 119, 293
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	292, 452, 458
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	204, 308, 429, 433
BspACI	CCGC	8 cut(s)	9, 184, 245, 286, 300, 312, 324, 472
BspANI	GGCC	1 cut(s)	444
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	3 cut(s)	288, 398, 474
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	4 cut(s)	204, 308, 429, 433
BssNI	GRCGYC	2 cut(s)	162, 456
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	62, 211
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	162, 456
BstC8I	GCNNGC	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	122, 147
BstFNI	CGCG	3 cut(s)	288, 398, 474
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	282, 400, 476
BstKTI	GATC	4 cut(s)	207, 311, 432, 436
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	4 cut(s)	204, 308, 429, 433
BstMCI	CGRYCG	2 cut(s)	61, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 244
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	4 cut(s)	27, 117, 291, 451
BstUI	CGCG	3 cut(s)	288, 398, 474
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	444
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	122, 147
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	3 cut(s)	282, 400, 476
Cfr13I	GGNCC	2 cut(s)	415, 443
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	4 cut(s)	170, 184, 404, 445
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	202, 347
CviJI	RGCY	6 cut(s)	52, 83, 358, 372, 385, 444
CviKI_1	RGCY	6 cut(s)	52, 83, 358, 372, 385, 444
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	4 cut(s)	206, 310, 431, 435
DpnII	GATC	4 cut(s)	204, 308, 429, 433
DrdI	GACNNNNNNGTC	1 cut(s)	302
DriI	GACNNNNNGTC	2 cut(s)	194, 238
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	367
Eam1105I	GACNNNNNGTC	2 cut(s)	194, 238
EarI	CTCTTC	1 cut(s)	367
EciI	GGCGGA	2 cut(s)	173, 301
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	205, 350
FaiI	YATR	2 cut(s)	203, 348
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	201, 346
FauI	CCCGC	2 cut(s)	16, 252
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	109, 134
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	3 cut(s)	281, 399, 475
GluI	GCNGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	3 cut(s)	28, 119, 293
HgaI	GACGC	4 cut(s)	170, 184, 404, 445
HhaI	GCGC	3 cut(s)	282, 400, 476
Hin1I	GRCGYC	2 cut(s)	162, 456
Hin1II	CATG	2 cut(s)	205, 350
Hin6I	GCGC	3 cut(s)	280, 398, 474
HinP1I	GCGC	3 cut(s)	280, 398, 474
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	4 cut(s)	95, 233, 296, 468
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	3 cut(s)	28, 119, 293
HphI	GGTGA	4 cut(s)	199, 244, 265, 343
Hpy166II	GTNNAC	2 cut(s)	199, 390
Hpy188I	TCNGA	6 cut(s)	58, 88, 169, 220, 308, 381
Hpy188III	TCNNGA	3 cut(s)	113, 151, 460
Hpy8I	GTNNAC	2 cut(s)	199, 390
Hpy99I	CGWCG	4 cut(s)	164, 332, 398, 461
HpyCH4III	ACNGT	2 cut(s)	62, 211
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 244
Hsp92I	GRCGYC	2 cut(s)	162, 456
Hsp92II	CATG	2 cut(s)	205, 350
HspAI	GCGC	3 cut(s)	280, 398, 474
Ksp22I	TGATCA	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	204, 308, 429, 433
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	3 cut(s)	131, 156, 279
MaeIII	GTNAC	2 cut(s)	62, 349
MalI	GATC	4 cut(s)	206, 310, 431, 435
MboI	GATC	4 cut(s)	204, 308, 429, 433
MboII	GAAGA	2 cut(s)	25, 354
MlyI	GAGTC	3 cut(s)	227, 290, 462
MmeI	TCCRAC	2 cut(s)	81, 192
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	28, 119, 293
MspR9I	CCNGG	4 cut(s)	29, 119, 293, 453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	3 cut(s)	288, 398, 474
MwoI	GCNNNNNNNGC	2 cut(s)	192, 244
NciI	CCSGG	3 cut(s)	29, 119, 293
NdeII	GATC	4 cut(s)	204, 308, 429, 433
NlaIII	CATG	2 cut(s)	205, 350
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	62, 349
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	436
PleI	GAGTC	3 cut(s)	227, 290, 462
PpsI	GAGTC	3 cut(s)	227, 290, 462
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	415, 443
PspPPI	RGGWCCY	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	204, 308, 429, 433
Sau96I	GGNCC	2 cut(s)	415, 443
SchI	GAGTC	3 cut(s)	227, 290, 462
ScrFI	CCNGG	4 cut(s)	29, 119, 293, 453
SetI	ASST	4 cut(s)	21, 54, 85, 252
SfaNI	GCATC	3 cut(s)	131, 156, 279
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	8 cut(s)	9, 184, 245, 286, 300, 312, 324, 472
StyD4I	CCNGG	4 cut(s)	27, 117, 291, 451
TaaI	ACNGT	2 cut(s)	62, 211
TaqI	TCGA	3 cut(s)	93, 114, 432
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseFI	GTSAC	2 cut(s)	62, 349
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	2 cut(s)	62, 349
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	115, 422
VpaK11BI	GGWCC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.