Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18590574 .. 18591074

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTCAGTGTTGCTGCACTTTTACTCATGATTTTATATCCATATGATAGGGAGGACTGCAGTATGAAGCCCCCGACGATCATTGTACCAAAGTGTATAAAAGAACTCGTGGAACAACTTTTTGAGGTGCACAGAAAAATGGACCAATCGGAGCTGAAGCATAACCTTATTGGCTTGGATGTTGGAGAAGAATTCTCTATGAGAAGGGATCTCAACGTAAAAGCCTTTAGGACTTACCATGGAATACCAAGTCAGTATATTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

6.27

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	87
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	132
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	78, 208
Bsp19I	CCATGG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	78, 208
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	81, 211
BstMBI	GATC	2 cut(s)	78, 208
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	28, 239
CviJI	RGCY	4 cut(s)	70, 154, 174, 224
CviKI_1	RGCY	4 cut(s)	70, 154, 174, 224
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	2 cut(s)	80, 210
DpnII	GATC	2 cut(s)	78, 208
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	31, 242
FatI	CATG	2 cut(s)	27, 238
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	31, 242
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	17, 60, 130
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	31, 242
Kzo9I	GATC	2 cut(s)	78, 208
LmnI	GCTCC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	80, 210
MboI	GATC	2 cut(s)	78, 208
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	2 cut(s)	46, 118
NcoI	CCATGG	1 cut(s)	238
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	2 cut(s)	78, 208
NlaIII	CATG	2 cut(s)	31, 242
PagI	TCATGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	78, 208
Sau96I	GGNCC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	129, 156, 168, 219
SfcI	CTRYAG	1 cut(s)	58
SgeI	CNNG	7 cut(s)	40, 85, 119, 121, 187, 251, 261
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	219
TasI	AATT	1 cut(s)	191
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.