Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18691752 .. 18692018

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGCAATGTTAAGTTTTATGATAGCGGAGTTGAGAGGTTTGGTAGTGATTTGGAGGTTTTATTTGGGGCATTTCGGGCTTGGTGTTTGAGGCCGGAGGGCTTTTTCCCCAAAGTAAGTGAAGGCTTGAAGCTTTTAAAGATGGAAGAAGAAAAACTTCAAAGTAGTTTGGCAAGAGGGGAGAAATGGATGAAGGAGAATGAGGTTAGACATTTGAGTGAAACAGAGGTAGAAAAGATTGTGAAGAGTAGAGTTTTTACGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

6.6

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINT1_TIP1	PF04437	3 - 83	2e-06	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	130, 161
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AoxI	GGCC	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	156
BccI	CCATC	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	195
CviJI	RGCY	5 cut(s)	80, 94, 102, 126, 133
CviKI_1	RGCY	5 cut(s)	80, 94, 102, 126, 133
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
FaiI	YATR	1 cut(s)	21
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FokI	GGATG	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	131
HpaII	CCGG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	116, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
LpnPI	CCDG	1 cut(s)	108
MboII	GAAGA	3 cut(s)	158, 161, 256
MnlI	CCTC	7 cut(s)	30, 49, 84, 91, 170, 196, 220
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	2 cut(s)	12, 137
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	12, 137
SetI	ASST	5 cut(s)	41, 60, 135, 207, 231
SgeI	CNNG	5 cut(s)	89, 93, 107, 139, 186
SmiMI	CAYNNNNRTG	1 cut(s)	216
SsiI	CCGC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	12, 137
Tru9I	TTAA	2 cut(s)	12, 137
TspDTI	ATGAA	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.