Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18870784 .. 18871704

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGCAGCTACCTTTTCCGTCGGAACCAATTGTTCCCTCGGCCACAAAGCGGCGGCGTTTCAGCAGTCAAAGCCTTGTGCTTTGAGGTTCAACTCCCAAAACCCTCTCAAGAGCTCTTTCAATGGGCTCAAGGCAACCCCATCTTTCAATTGTGAAACCGAGACCTCGTTCTCCGGCAAAGAAACCGCGGTGGCTCTTCGAGCTTCTTTTGCTCGAAAAGCCCACAAGGAAGCGCAAGTGGTTCAGTCTCAGTTCCAGCCCCAGGCCTCATATAAAGTAGCTGTTCTTGGAGCTGCCGGTGGGATCGGTCAGCCACTGGCTCTTCTGATCAAGATGTCGCCTTTGGTCTCCTCCCTGCATCTTTACGATATTGCTAATGTCAAGGGTGTTGCTGCTGACTTGAGTCACTGCAACACTCCTTCTGAAGTTATTGATTTCACCGGAGCTGCCGAGTTGCCCAATTCCTTGAAAGGTGTGGATGTGGTGGTCATTCCTGCCGGAGTTCCAAGAAAGCCCGGTATGACCCGCGATGACCTCTTCAACATCAATGCCGGCATTGTGAAGAACTTGATCGAGGCTGTGGCAGATAACTGCCCTGATGCATTCATTCATATTATCAGTAATCCGGTGAACTCCACGGTGCCAATTGCTGCCGAAGTTCTGAAGCAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTTTCTACCTTGGATGTTGTGAGGGCGAACACATTTGTTGCTCAGAAGAAGAATCTGAAATTGATTGATGTTGATGTCCCAGTTGTCGGAGGACATGCTGGGATAACTATTCTGCCCCTGCTATCCAAGACAAATCCCTCTGTTAGCCTCACTGACGAAGAAGTTGAACAGCTAACTGTTAGGATCCATCGAGAAATGCTGGAACCGAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

307

Amino Acids

32.49

Weight (kDa)

8.91

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	93 - 235	1.2e-47	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	238 - 299	7.6e-12	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AccB1I	GGYRCC	1 cut(s)	643
AccII	CGCG	2 cut(s)	191, 531
AciI	CCGC	5 cut(s)	53, 56, 189, 191, 529
AclWI	GGATC	3 cut(s)	314, 883, 896
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	447, 686
AfiI	CCNNNNNNNGG	3 cut(s)	52, 265, 791
AgsI	TTSAA	6 cut(s)	94, 124, 151, 472, 544, 872
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	8 cut(s)	11, 117, 206, 284, 296, 449, 697, 877
AluI	AGCT	8 cut(s)	11, 117, 206, 284, 296, 449, 697, 877
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	3 cut(s)	158, 255, 355
AlwI	GGATC	3 cut(s)	314, 883, 896
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	2 cut(s)	43, 267
ApeKI	GCWGC	6 cut(s)	5, 8, 296, 395, 449, 653
AspLEI	GCGC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	433, 643
BamHI	GGATCC	1 cut(s)	888
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	119, 132
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	6 cut(s)	17, 20, 283, 382, 436, 640
BccI	CCATC	2 cut(s)	151, 900
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	3 cut(s)	158, 255, 355
BisI	GCNGC	8 cut(s)	6, 9, 54, 57, 297, 396, 450, 654
BlsI	GCNGC	8 cut(s)	7, 10, 55, 58, 298, 397, 451, 655
Bme1390I	CCNGG	2 cut(s)	266, 519
BmiI	GGNNCC	4 cut(s)	28, 645, 890, 909
BmrFI	CCNGG	2 cut(s)	266, 519
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	370, 592
BmuI	ACTGGG	1 cut(s)	779
BoxI	GACNNNNGTC	1 cut(s)	405
BpuEI	CTTGAG	3 cut(s)	95, 116, 424
BpuMI	CCSGG	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	158, 355
BsaJI	CCNNGG	6 cut(s)	40, 189, 264, 639, 714, 911
BsaWI	WCCGGW	2 cut(s)	443, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 265, 791
Bse118I	RCCGGY	2 cut(s)	299, 554
Bse1I	ACTGG	2 cut(s)	324, 785
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	6 cut(s)	40, 189, 264, 639, 714, 911
BseGI	GGATG	2 cut(s)	487, 724
BseLI	CCNNNNNNNGG	3 cut(s)	52, 265, 791
BseMII	CTCAG	2 cut(s)	266, 761
BseNI	ACTGG	2 cut(s)	324, 785
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	6 cut(s)	17, 20, 283, 382, 436, 640
BseYI	CCCAGC	1 cut(s)	803
Bsh1236I	CGCG	2 cut(s)	191, 531
BshFI	GGCC	2 cut(s)	45, 269
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	7 cut(s)	177, 300, 444, 501, 519, 555, 629
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	52, 265, 791
BsmAI	GTCTC	3 cut(s)	158, 255, 355
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	45, 269
Bso31I	GGTCTC	2 cut(s)	158, 355
Bsp1286I	GDGCHC	2 cut(s)	119, 132
Bsp143I	GATC	4 cut(s)	306, 330, 573, 888
BspACI	CCGC	5 cut(s)	53, 56, 189, 191, 529
BspANI	GGCC	2 cut(s)	45, 269
BspCNI	CTCAG	2 cut(s)	265, 760
BspFNI	CGCG	2 cut(s)	191, 531
BspLI	GGNNCC	4 cut(s)	28, 645, 890, 909
BspPI	GGATC	3 cut(s)	314, 883, 896
BspQI	GCTCTTC	2 cut(s)	204, 330
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	2 cut(s)	158, 355
BsrFI	RCCGGY	2 cut(s)	299, 554
BsrI	ACTGG	2 cut(s)	324, 785
BssAI	RCCGGY	2 cut(s)	299, 554
BssECI	CCNNGG	6 cut(s)	40, 189, 264, 639, 714, 911
BssMI	GATC	4 cut(s)	306, 330, 573, 888
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	643, 883
Bst6I	CTCTTC	3 cut(s)	204, 330, 545
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	252, 747
BstDSI	CCRYGG	2 cut(s)	189, 639
BstF5I	GGATG	2 cut(s)	487, 724
BstFNI	CGCG	2 cut(s)	191, 531
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	4 cut(s)	309, 333, 576, 891
BstMAI	GTCTC	3 cut(s)	158, 255, 355
BstMBI	GATC	4 cut(s)	306, 330, 573, 888
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 203, 212, 221
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	803
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	264, 517
BstUI	CGCG	2 cut(s)	191, 531
BstV1I	GCAGC	6 cut(s)	17, 20, 283, 382, 436, 640
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	45, 269
BtgI	CCRYGG	2 cut(s)	189, 639
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	487, 724
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	3 cut(s)	317, 409, 855
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	299, 554
Cfr42I	CCGCGG	1 cut(s)	192
CviAII	CATG	1 cut(s)	800
DdeI	CTNAG	2 cut(s)	252, 747
DpnI	GATC	4 cut(s)	308, 332, 575, 890
DpnII	GATC	4 cut(s)	306, 330, 573, 888
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	204, 330, 545
EarI	CTCTTC	3 cut(s)	204, 330, 545
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	119, 132
Eco31I	GGTCTC	2 cut(s)	158, 355
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	447, 686
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	119, 132
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	1 cut(s)	803
FaiI	YATR	6 cut(s)	274, 276, 524, 615, 684, 801
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	1 cut(s)	799
FauI	CCCGC	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	8 cut(s)	6, 9, 54, 57, 297, 396, 450, 654
FokI	GGATG	2 cut(s)	494, 731
FriOI	GRGCYC	2 cut(s)	119, 132
Fsp4HI	GCNGC	8 cut(s)	6, 9, 54, 57, 297, 396, 450, 654
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	8 cut(s)	6, 9, 54, 57, 297, 396, 450, 654
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	45, 269
HapII	CCGG	7 cut(s)	177, 300, 444, 501, 519, 555, 629
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	803
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	406, 757
HpaII	CCGG	7 cut(s)	177, 300, 444, 501, 519, 555, 629
HphI	GGTGA	2 cut(s)	433, 643
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	7 cut(s)	26, 330, 427, 666, 750, 762, 794
Hpy188III	TCNNGA	3 cut(s)	112, 334, 896
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	432, 667
HpyCH4III	ACNGT	2 cut(s)	643, 883
HpyCH4V	TGCA	3 cut(s)	361, 414, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 203, 212, 221
HpyF3I	CTNAG	2 cut(s)	252, 747
Hsp92II	CATG	1 cut(s)	803
HspAI	GCGC	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	306, 330, 573, 888
LguI	GCTCTTC	2 cut(s)	204, 330
LmnI	GCTCC	2 cut(s)	293, 446
Lsp1109I	GCAGC	6 cut(s)	17, 20, 283, 382, 436, 640
LweI	GCATC	2 cut(s)	370, 592
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	308, 332, 575, 890
MboI	GATC	4 cut(s)	306, 330, 573, 888
MboII	GAAGA	7 cut(s)	191, 317, 532, 577, 763, 766, 875
MfeI	CAATTG	3 cut(s)	31, 151, 648
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	119, 132
MluCI	AATT	5 cut(s)	31, 151, 463, 648, 764
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	4, 772
Mph1103I	ATGCAT	1 cut(s)	607
MroNI	GCCGGC	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	7 cut(s)	177, 300, 444, 501, 519, 555, 629
MspR9I	CCNGG	2 cut(s)	266, 519
MunI	CAATTG	3 cut(s)	31, 151, 648
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	191, 531
MwoI	GCNNNNNNNGC	4 cut(s)	73, 203, 212, 221
NaeI	GCCGGC	1 cut(s)	556
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	306, 330, 573, 888
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	1 cut(s)	803
NlaIV	GGNNCC	4 cut(s)	28, 645, 890, 909
NmeAIII	GCCGAG	2 cut(s)	21, 478
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	269
PciSI	GCTCTTC	2 cut(s)	204, 330
PctI	GAATGC	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	757
PkrI	GCNGC	8 cut(s)	7, 10, 55, 58, 298, 397, 451, 655
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshAI	GACNNNNGTC	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	28, 645, 890, 909
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	888
SacI	GAGCTC	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	192
SapI	GCTCTTC	2 cut(s)	204, 330
SatI	GCNGC	8 cut(s)	6, 9, 54, 57, 297, 396, 450, 654
Sau3AI	GATC	4 cut(s)	306, 330, 573, 888
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	266, 519
SduI	GDGCHC	2 cut(s)	119, 132
SfaNI	GCATC	2 cut(s)	370, 592
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	110, 131, 403
SmoI	CTYRAG	3 cut(s)	110, 131, 403
Sse9I	AATT	5 cut(s)	31, 151, 463, 648, 764
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	5 cut(s)	53, 56, 189, 191, 529
SstI	GAGCTC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	264, 517
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	643, 883
TaqI	TCGA	4 cut(s)	202, 217, 576, 895
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	5 cut(s)	31, 151, 463, 648, 764
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	1 cut(s)	757
TscAI	CASTG	3 cut(s)	324, 416, 862
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	6 cut(s)	5, 8, 296, 395, 449, 653
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	598, 602
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	324, 416, 862
XceI	RCATGY	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.