pycom14g17420

Predicted membrane protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
19364117 .. 19365331
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGCCCTTGTGTGGGTCGCAAGCCTTCTCAACCTCGCCTGGTGCGCTCTTCAGGCATGGCAGTGCTCAGGTGGGAATGTTTACGGGTTTTGCAATGCTGGGATTGGAAATTAGCTTGGTAATCTATGTGTTCGGGTTTGGGGTACGACTGTTCATCGTTGGCATCGGAAGTACATTTGGAGTGAAGTGGGGCTTGTGGCACATCCACAAATTATTGCTTACTGCACTTTATGGATTCATATTGTTTGTGCATTTCTCAAAATTGACAGAGAAGTTACCTCTGGTCTGGCATCGTTTGGTTGCGGGCTTGCTGGAATTGGAGCTAGTTTCGGAATCTGGTTGTACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.7

Weight (kDa)

8.74

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_40 PF10160 41 - 94 6.8e-14 Predicted membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 34
AfaI GTAC 3 cut(s) 144, 172, 343
AfiI CCNNNNNNNGG 2 cut(s) 11, 12
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 114, 322
AluI AGCT 2 cut(s) 114, 322
Alw21I GWGCWC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
Bbv12I GWGCWC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 171, 298
Bpu10I CCTNAGC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 12
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 11, 12
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 11, 12
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 341
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 341
BstC8I GCNNGC 3 cut(s) 21, 304, 308
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 43, 52
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 3 cut(s) 21, 304, 308
CfoI GCGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 143, 171, 342
CviAII CATG 1 cut(s) 56
CviJI RGCY 5 cut(s) 23, 114, 192, 306, 322
CviKI_1 RGCY 5 cut(s) 23, 114, 192, 306, 322
CviQI GTAC 3 cut(s) 143, 171, 342
DdeI CTNAG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 57, 126, 231, 239
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 55
FauI CCCGC 1 cut(s) 295
FokI GGATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 2 cut(s) 234, 332
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 167, 331
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 92, 224, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 52
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 44
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 9 cut(s) 24, 37, 51, 53, 83, 266, 271, 296, 321
LweI GCATC 2 cut(s) 171, 298
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 273
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 5 cut(s) 108, 209, 260, 314, 345
MnlI CCTC 2 cut(s) 43, 288
MslI CAYNNNNRTG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 43, 52
NlaIII CATG 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 234, 332
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 37
RsaI GTAC 3 cut(s) 144, 172, 343
RsaNI GTAC 3 cut(s) 143, 171, 342
RseI CAYNNNNRTG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 67
SetI ASST 5 cut(s) 35, 72, 116, 280, 324
SfaNI GCATC 2 cut(s) 171, 298
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 5 cut(s) 108, 209, 260, 314, 345
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 150
TasI AATT 5 cut(s) 108, 209, 260, 314, 345
TatI WGTACW 2 cut(s) 170, 341
TfiI GAWTC 2 cut(s) 234, 332
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 142, 226
TspRI CASTG 1 cut(s) 67
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.