Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19411071 .. 19411753

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGGTTGCTGAAGATGTTGACTGTAAGAGCAAAGGTCAGCAGCAGAAGAGGACGAGGAGGGTAGGATTGTTGTACGACGAGAGGATGTGTAAGCACTCCACACCAGACGGCGATCCTCATCCGGAAAACCCCAACCGAATTAAGGCAATCTGGAACAAGCTCCAATCAGCTGCCATTCCCCAGAGGTGTGTTGTTTTGGAAGCAAAAGAAGCAGAAGACAAGCATATTTTGTCAGTTCACACCAAAAAACATGTTGATCGATTAGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006338 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0022622 GO:0030154 GO:0030856 GO:0032501 GO:0032502 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098732 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

92

Amino Acids

10.42

Weight (kDa)

8.86

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	41 - 89	1.3e-07	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	124
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	253
AluBI	AGCT	2 cut(s)	163, 173
AluI	AGCT	2 cut(s)	163, 173
AlwI	GGATC	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	43, 173
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	55, 160
BceAI	ACGGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	44, 174
BlsI	GCNGC	2 cut(s)	45, 175
BpiI	GAAGAC	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	262
BseGI	GGATG	2 cut(s)	93, 121
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	55, 160
BshVI	ATCGAT	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	115, 259
BspDI	ATCGAT	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	124
BspPI	GGATC	1 cut(s)	110
BssMI	GATC	2 cut(s)	115, 259
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	93, 121
BstKTI	GATC	2 cut(s)	118, 262
BstMBI	GATC	2 cut(s)	115, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	55, 160
BstV2I	GAAGAC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	93, 121
ClaI	ATCGAT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	2 cut(s)	163, 173
CviKI_1	RGCY	2 cut(s)	163, 173
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	2 cut(s)	117, 261
DpnII	GATC	2 cut(s)	115, 259
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	33
FaeI	CATG	1 cut(s)	257
FaiI	YATR	3 cut(s)	228, 255, 274
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	44, 174
FokI	GGATG	2 cut(s)	100, 108
Fsp4HI	GCNGC	2 cut(s)	44, 174
GluI	GCNGC	2 cut(s)	44, 174
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	22, 241
Hpy188III	TCNNGA	2 cut(s)	125, 154
Hpy8I	GTNNAC	2 cut(s)	22, 241
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	115, 259
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	120, 138, 139, 197
Lsp1109I	GCAGC	2 cut(s)	55, 160
MalI	GATC	2 cut(s)	117, 261
MboI	GATC	2 cut(s)	115, 259
MboII	GAAGA	3 cut(s)	26, 61, 230
MluCI	AATT	1 cut(s)	141
MnlI	CCTC	6 cut(s)	45, 51, 54, 78, 129, 180
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	115, 259
NlaIII	CATG	1 cut(s)	257
NspI	RCATGY	1 cut(s)	257
PciI	ACATGT	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	45, 175
PscI	ACATGT	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	44, 174
Sau3AI	GATC	2 cut(s)	115, 259
SetI	ASST	5 cut(s)	9, 40, 165, 175, 191
SgeI	CNNG	9 cut(s)	69, 94, 119, 137, 166, 172, 196, 235, 266
Sse9I	AATT	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	43, 173
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.