Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19470593 .. 19473078

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCTTCCTCCCACTGCTTTGCTCCTTTTGTGTTCCTACTGCTCCTTGTTGGGTGTTCTGGAAGGCCATTCTATCCACTTCCTAGTAAAGCAGCTGATGCTACCAATAGACAGCCTCTACAAACTTATCGTCCATACAACGTTGCTCATCGAGGTTCAAATGGAGAGATTCCCGAAGAAACTGCTGCTGCATACATGAGAGCTATTGAAGAGGGTGCAGACTTCATTGAAACGGATATCCTATCTTCTAAAGATGGTGTTCTTATATGCTTTCATGATGTGACCCTTGATGACACAACCGATGTTGCTGAACACAAGGAATTTGCAGATCGTAAAAGAACCTATGAAGTTCAAGGGGTCAACACTACTGGTTTTTTTACTGTTGATTTTACACTAAAAGAACTGAAGTCATTACGAGTGAAGCAGAGATACCCATTTCGGGATCAACAATATAATGGAAAATATCCTATTATTACTTTTGAAGAGTTCATTTCAATCGCACTGGATGCACCCAGAGTTGTTGGAATATATCCAGAGATTAAAAACCCAGTATTGATCAACCAACATGTGAAGTGGGCAGATGGTAAGAGGTTCGAGGACAGATTTGTGGAGACACTTAATAAGTACGGATACAAGGGTTCATACCTATCAAAAAATTGGTTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTATACATATCAAATCTGACAGACTTGCCCAAGATCGATCTTCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

6.23

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	50 - 248	5.1e-36	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	708
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	7 cut(s)	159, 209, 230, 353, 482, 495, 664
AluBI	AGCT	2 cut(s)	95, 203
AluI	AGCT	2 cut(s)	95, 203
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	92, 185, 188
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
BaeI	ACNNNNGTAYC	2 cut(s)	622, 655
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbvI	GCAGC	3 cut(s)	104, 172, 175
BccI	CCATC	2 cut(s)	248, 575
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciVI	GTATCC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	3 cut(s)	93, 186, 189
BlsI	GCNGC	3 cut(s)	94, 187, 190
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	88, 496
BmuI	ACTGGG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	4 cut(s)	373, 507, 548, 682
BseCI	ATCGAT	1 cut(s)	741
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseNI	ACTGG	4 cut(s)	373, 507, 548, 682
BseXI	GCAGC	3 cut(s)	104, 172, 175
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	328, 442, 555, 738, 742
BspANI	GGCC	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	741
BspHI	TCATGA	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	373, 507, 548, 682
BssMI	GATC	5 cut(s)	328, 442, 555, 738, 742
BssNAI	GTATAC	1 cut(s)	709
Bst1107I	GTATAC	1 cut(s)	709
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	204, 477
BstAPI	GCANNNNNTGC	2 cut(s)	98, 506
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	5 cut(s)	331, 445, 558, 741, 745
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	5 cut(s)	328, 442, 555, 738, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 506
BstNSI	RCATGY	1 cut(s)	569
BstV1I	GCAGC	3 cut(s)	104, 172, 175
BstZ17I	GTATAC	1 cut(s)	709
Bsu15I	ATCGAT	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	67
BsuTUI	ATCGAT	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 500
BveI	ACCTGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	3 cut(s)	196, 275, 566
CviJI	RGCY	4 cut(s)	67, 95, 115, 203
CviKI_1	RGCY	4 cut(s)	67, 95, 115, 203
CviQI	GTAC	1 cut(s)	625
DpnI	GATC	5 cut(s)	330, 444, 557, 740, 744
DpnII	GATC	5 cut(s)	328, 442, 555, 738, 742
Eam1104I	CTCTTC	2 cut(s)	204, 477
EarI	CTCTTC	2 cut(s)	204, 477
Eco32I	GATATC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	3 cut(s)	199, 278, 569
FatI	CATG	3 cut(s)	195, 274, 565
FbaI	TGATCA	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	3 cut(s)	93, 186, 189
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	93, 186, 189
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	93, 186, 189
HaeIII	GGCC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	199, 278, 569
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	361, 709
Hpy188I	TCNGA	1 cut(s)	723
Hpy188III	TCNNGA	5 cut(s)	60, 173, 275, 440, 533
Hpy8I	GTNNAC	2 cut(s)	361, 709
HpyAV	CCTTC	2 cut(s)	15, 57
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	191, 218, 326, 509, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 506
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	199, 278, 569
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	328, 442, 555, 738, 742
LmnI	GCTCC	3 cut(s)	28, 48, 697
LpnPI	CCDG	8 cut(s)	45, 354, 488, 526, 546, 561, 684, 695
Lsp1109I	GCAGC	3 cut(s)	104, 172, 175
LweI	GCATC	2 cut(s)	88, 496
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	5 cut(s)	330, 444, 557, 740, 744
MboI	GATC	5 cut(s)	328, 442, 555, 738, 742
MboII	GAAGA	5 cut(s)	188, 221, 237, 494, 737
MluCI	AATT	3 cut(s)	320, 655, 751
MmeI	TCCRAC	2 cut(s)	502, 719
MnlI	CCTC	6 cut(s)	19, 126, 146, 205, 582, 589
MseI	TTAA	3 cut(s)	540, 618, 750
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	98, 506
NdeII	GATC	5 cut(s)	328, 442, 555, 738, 742
NlaIII	CATG	3 cut(s)	199, 278, 569
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	569
PagI	TCATGA	1 cut(s)	274
PciI	ACATGT	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	94, 187, 190
PscI	ACATGT	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	540, 618, 750
SatI	GCNGC	3 cut(s)	93, 186, 189
Sau3AI	GATC	5 cut(s)	328, 442, 555, 738, 742
SetI	ASST	8 cut(s)	97, 144, 157, 205, 344, 593, 648, 673
SfaNI	GCATC	2 cut(s)	88, 496
Sse9I	AATT	3 cut(s)	320, 655, 751
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	151, 594, 741
TasI	AATT	3 cut(s)	320, 655, 751
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	540, 618, 750
Tru9I	TTAA	3 cut(s)	540, 618, 750
TscAI	CASTG	2 cut(s)	20, 507
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	92, 185, 188
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	214, 263, 360, 478, 630
TspGWI	ACGGA	2 cut(s)	248, 642
TspRI	CASTG	2 cut(s)	20, 507
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.