pycom14g18460

ATP-dependent Clp protease adapter protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
20103238 .. 20103950
713 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGTGTACATGCCACACATCTCAACTTCCTGTCTTTTGTGGCACAAACACTCAGACTTTTAGAGAGAGAGAGAGAGAGAGGAGAGAGAGGCTCATGGCTGCCATCTGCGGTCGAGTCCATCTTTCGCCAAATCATGGATTCAATCTCAACAAATCAGGTGATAAACATTGTTTTCATAGACAAAGTCCAAATCGGAGCATCTTGATGACAGCATCGGCCACCAGGCTTGGCACAGGTGGTGGGGTGTTAGACAAGCCAACCATAGAGAAAACAACTCCTAGTCGTGACTCTGAGTTTGACGTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.49

Weight (kDa)

9.55

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 216
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 142
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 221
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 98
ArsI GACNNNNNNTTYG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 170
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 110, 126
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 207, 221
BplI GAGNNNNNCTC 2 cut(s) 75, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 65, 282
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 134
BsnI GGCC 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 5
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 64, 283
BsrGI TGTACA 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 51, 291
BstMCI CGRYCG 1 cut(s) 112
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 218
BtrI CACGTC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 3 cut(s) 9, 94, 134
CviJI RGCY 5 cut(s) 91, 98, 218, 226, 256
CviKI_1 RGCY 5 cut(s) 91, 98, 218, 226, 256
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 51, 291
EaeI YGGCCR 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 12, 97, 137
FaiI YATR 5 cut(s) 10, 95, 135, 177, 263
FatI CATG 3 cut(s) 8, 93, 133
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 3 cut(s) 12, 97, 137
HinfI GANTC 3 cut(s) 114, 138, 287
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 54, 195, 292
Hpy188III TCNNGA 2 cut(s) 202, 284
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 300
HpyF3I CTNAG 2 cut(s) 51, 291
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 3 cut(s) 12, 97, 137
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 5 cut(s) 42, 141, 208, 219, 235
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 207, 221
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 284
MlyI GAGTC 2 cut(s) 123, 281
MnlI CCTC 2 cut(s) 72, 81
MslI CAYNNNNRTG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
NlaIII CATG 3 cut(s) 12, 97, 137
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 1 cut(s) 12
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 122, 281
PpsI GAGTC 2 cut(s) 122, 281
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 183
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 203
SatI GCNGC 1 cut(s) 99
SchI GAGTC 2 cut(s) 123, 281
ScrFI CCNGG 1 cut(s) 223
SetI ASST 3 cut(s) 160, 238, 303
SfaNI GCATC 2 cut(s) 207, 221
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 221
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 112
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 138
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 134
XceI RCATGY 1 cut(s) 12
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.