pycom14g19540
ERF Family

DDE superfamily endonuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Forward (+)
20822074 .. 20822678
605 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGAGAAGCAGGACGAGCTCGACCACGACAGGATATCGAATGACGACACGTCGTTAATAGAAGAGACGCACAAGGAGAGGAACAAGGCCATTCAGGATTACTACTCCGATTTGCAGGAGTGCTACTCGGAGGTGGAAGAATCTGAAACGATGAAGCGGAGAAAAATGAGAAGCGCCGTCTGTGCGGCGGTCTCTGCGTTAGCTGATGGAGTCGAAAAAGGGTTTTCGGATGGGGAAATCCACGTTCGATTTAATATACGAGGAGCTCAACTCACCATCGCGAAGGAGGACACGACGCTGCGGAACGCGATTCCGGTGCGACAGAGAGTGGCGGTGTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

5.08

Isoelectric Point (pI)

67.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 281, 308
AciI CCGC 5 cut(s) 157, 185, 188, 301, 332
AflIII ACRYGT 1 cut(s) 48
AhdI GACNNNNNGTC 1 cut(s) 49
AjiI CACGTC 1 cut(s) 51
AluBI AGCT 3 cut(s) 19, 203, 266
AluI AGCT 3 cut(s) 19, 203, 266
Alw21I GWGCWC 2 cut(s) 21, 268
Alw26I GTCTC 2 cut(s) 59, 196
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 265
BanII GRGCYC 2 cut(s) 21, 268
Bbv12I GWGCWC 2 cut(s) 21, 268
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 200, 224, 284
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BcoDI GTCTC 2 cut(s) 59, 196
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 2 cut(s) 186, 299
BlsI GCNGC 2 cut(s) 187, 300
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 51
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 255, 287
BsaI GGTCTC 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 313
BseGI GGATG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 281, 308
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 21, 268
BsiSI CCGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 59, 196
BsmBI CGTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 21, 268
Bsp68I TCGCGA 1 cut(s) 281
BspACI CCGC 5 cut(s) 157, 185, 188, 301, 332
BspANI GGCC 1 cut(s) 89
BspFNI CGCG 2 cut(s) 281, 308
BspTNI GGTCTC 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 57
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 281, 308
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 2 cut(s) 59, 196
BstMWI GCNNNNNNNGC 3 cut(s) 16, 182, 194
BstUI CGCG 2 cut(s) 281, 308
BstV1I GCAGC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 235
BtuMI TCGCGA 1 cut(s) 281
CfoI GCGC 1 cut(s) 176
CseI GACGC 2 cut(s) 76, 304
CviJI RGCY 4 cut(s) 19, 89, 203, 266
CviKI_1 RGCY 4 cut(s) 19, 89, 203, 266
DriI GACNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 2 cut(s) 19, 266
Eco24I GRGCYC 2 cut(s) 21, 268
Eco31I GGTCTC 1 cut(s) 196
Eco32I GATATC 1 cut(s) 36
Eco53kI GAGCTC 2 cut(s) 19, 266
EcoICRI GAGCTC 2 cut(s) 19, 266
EcoRV GATATC 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 21, 268
Esp3I CGTCTC 1 cut(s) 59
FaiI YATR 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 186, 299
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 21, 268
Fsp4HI GCNGC 2 cut(s) 186, 299
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 186, 299
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 314
HgaI GACGC 2 cut(s) 76, 304
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 3 cut(s) 140, 210, 310
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 4 cut(s) 109, 130, 145, 229
Hpy188III TCNNGA 2 cut(s) 95, 280
Hpy99I CGWCG 2 cut(s) 55, 298
HpyAV CCTTC 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 50, 243
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 182, 194
HpySE526I ACGT 2 cut(s) 50, 243
HspAI GCGC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 4 cut(s) 16, 80, 101, 327
Lsp1109I GCAGC 1 cut(s) 285
MaeII ACGT 2 cut(s) 50, 243
MboII GAAGA 2 cut(s) 74, 149
MhlI GDGCHC 2 cut(s) 21, 268
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 4 cut(s) 72, 124, 254, 280
MseI TTAA 2 cut(s) 56, 252
MspI CCGG 1 cut(s) 314
MvnI CGCG 2 cut(s) 281, 308
MwoI GCNNNNNNNGC 3 cut(s) 16, 182, 194
NruI TCGCGA 1 cut(s) 281
PfeI GAWTC 2 cut(s) 140, 310
PkrI GCNGC 2 cut(s) 187, 300
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp124BI GAGCTC 2 cut(s) 21, 268
RruI TCGCGA 1 cut(s) 281
SacI GAGCTC 2 cut(s) 21, 268
SaqAI TTAA 2 cut(s) 56, 252
SatI GCNGC 2 cut(s) 186, 299
SchI GAGTC 1 cut(s) 219
SduI GDGCHC 2 cut(s) 21, 268
SetI ASST 6 cut(s) 21, 53, 135, 205, 246, 268
SsiI CCGC 5 cut(s) 157, 185, 188, 301, 332
SstI GAGCTC 2 cut(s) 21, 268
TaiI ACGT 2 cut(s) 53, 246
TaqI TCGA 4 cut(s) 21, 38, 213, 247
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 140, 310
Tru1I TTAA 2 cut(s) 56, 252
Tru9I TTAA 2 cut(s) 56, 252
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.