pycom14g19670

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
20911088 .. 20912473
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1053 bp
ATGTTAAAAATCATTTTTAAAAAGACTTCGGAGAGGATCCTTTCACCAAATTATAGGTCCACATTTCAACCTTCTTCGTTTTTTGGGTACAGACATTTCAACCATCTTTACCCTACCATTCCCATTTTACTCTACTTCTACCCCCTTTCCCTTCTCTCTATAAAATCCTTCCCCATCTCCATCAATTTACAGAGAAGGCTTTGCAGAAGCAGAGCAACCCTGTTTTCTTCTCTTATAATCTCCGGATTCTCAGCCATGGCTGCATTGCTGAAGACTAACCTCCCCCTCATGCTCCCCACCCTCCTCTATCTCTACATTTTAGTTTCGGTCACCTCCGCCACGACAATAACAATGTACAACAAGTGCACCCACCCGGTGTGGCCAGGCATCCAGCCGAGCGCCGGCCAGCCCATCCTCGCCCGTGGCGGCTTCACCCTCCCACCCAACAAAGCCCACACCCTCCACCTCCCCCCACTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCACCTTCGATGCCTCCGGCCGCGGCCGCTGCGCAACCGGCGACTGTGGCGGAAACCTCTTCTGCAGCGGCCTAGGCGGCACCCCACCCGCCACCCTAGCCGAAATCACCCTCGGAAACGAACAGGACTTCTACGATGTCAGCCTCGTCGACGGCTACAACCTCGCCATCTCCATCACCCCGTTTAAGGGCTCCGGCAAGTGCAGCTACGCCGGCTGCGTCAGCGATTTGAACATGATGTGCCCTGTCGGCCTCCAAGTCCGCTCCCACGACAACCGCCAGGTGGTGGCGTGCAAGAGCGCTTGCTCTGCTTTCAACTCTCCGAGGTACTGCTGCACCGGCAGCTTCGGCAGCCCTCAGTCGTGCAAGCCGACGGCGTACTCCAAGATCTTCAAGGCGGCGTGCCCCAAGGCTTACTCGTACGCTTACGACGACCCCACCAGCATCGCCACCTGCACTCGCGGGAACTTCTTGGTCACCTTCTGCCCTCACCACCATCGATCTCATCTCATCCATCTTAATTATTTATTATCACCTGGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

351

Amino Acids

38.38

Weight (kDa)

9.38

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 120 - 332 1.2e-81 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AarI CACCTGC 1 cut(s) 968
Acc16I TGCGCA 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 968
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 793
AccBSI CCGCTC 1 cut(s) 771
AccI GTMKAC 1 cut(s) 657
AccII CGCG 2 cut(s) 531, 969
AccIII TCCGGA 1 cut(s) 242
AclWI GGATC 2 cut(s) 31, 44
AcoI YGGCCR 5 cut(s) 380, 403, 484, 526, 532
AcuI CTGAAG 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 5 cut(s) 89, 356, 836, 887, 929
AfeI AGCGCT 1 cut(s) 808
AfiI CCNNNNNNNGG 7 cut(s) 401, 477, 493, 694, 695, 790, 793
AgsI TTSAA 5 cut(s) 68, 100, 739, 823, 901
AjnI CCWGG 3 cut(s) 382, 786, 1042
AluBI AGCT 2 cut(s) 714, 852
AluI AGCT 2 cut(s) 714, 852
Alw21I GWGCWC 1 cut(s) 368
Alw44I GTGCAC 1 cut(s) 364
AlwI GGATC 2 cut(s) 31, 44
Aor13HI TCCGGA 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 808
AoxI GGCC 8 cut(s) 380, 403, 484, 496, 526, 532, 577, 757
ApaLI GTGCAC 1 cut(s) 364
ApeKI GCWGC 9 cut(s) 260, 507, 537, 573, 711, 723, 840, 849, 858
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspA2I CCTAGG 1 cut(s) 580
AspLEI GCGC 3 cut(s) 401, 542, 809
AspS9I GGNCC 3 cut(s) 57, 480, 496
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 8 cut(s) 36, 322, 424, 607, 676, 976, 989, 1032
AvaII GGWCC 2 cut(s) 57, 480
AvrII CCTAGG 1 cut(s) 580
BaeGI GKGCMC 3 cut(s) 368, 752, 914
BalI TGGCCA 1 cut(s) 382
BamHI GGATCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 9 cut(s) 247, 494, 524, 585, 710, 723, 827, 861, 870
BccI CCATC 8 cut(s) 111, 182, 188, 419, 683, 689, 1011, 1029
BceAI ACGGC 3 cut(s) 520, 676, 897
BciT130I CCWGG 3 cut(s) 384, 788, 1044
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 2 cut(s) 581, 605
BfmI CTRYAG 1 cut(s) 571
BfoI RGCGCY 2 cut(s) 402, 810
BfuAI ACCTGC 1 cut(s) 968
BglI GCCNNNNNGGC 3 cut(s) 504, 585, 756
BglII AGATCT 1 cut(s) 894
BlnI CCTAGG 1 cut(s) 580
Bme1390I CCNGG 4 cut(s) 374, 384, 788, 1044
Bme18I GGWCC 2 cut(s) 57, 480
BmgT120I GGNCC 3 cut(s) 57, 480, 496
BmiI GGNNCC 4 cut(s) 38, 497, 589, 700
BmrFI CCNGG 4 cut(s) 374, 384, 788, 1044
BmsI GCATC 3 cut(s) 396, 508, 960
BpiI GAAGAC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 1006
BsaJI CCNNGG 8 cut(s) 255, 421, 502, 529, 580, 619, 830, 915
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 7 cut(s) 401, 477, 493, 694, 695, 790, 793
Bse118I RCCGGY 4 cut(s) 401, 545, 719, 845
Bse3DI GCAATG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 242
BseBI CCWGG 3 cut(s) 384, 788, 1044
BseCI ATCGAT 1 cut(s) 1006
BseDI CCNNGG 8 cut(s) 255, 421, 502, 529, 580, 619, 830, 915
BseGI GGATG 3 cut(s) 387, 411, 1017
BseLI CCNNNNNNNGG 7 cut(s) 401, 477, 493, 694, 695, 790, 793
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 264, 878
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 3 cut(s) 368, 752, 914
BseX3I CGGCCG 3 cut(s) 484, 526, 532
BseXI GCAGC 9 cut(s) 247, 494, 524, 585, 710, 723, 827, 861, 870
BsgI GTGCAG 4 cut(s) 493, 730, 826, 946
Bsh1236I CGCG 2 cut(s) 531, 969
Bsh1285I CGRYCG 3 cut(s) 487, 529, 535
BshFI GGCC 8 cut(s) 382, 405, 486, 498, 528, 534, 579, 759
BshNI GGYRCC 1 cut(s) 587
BshVI ATCGAT 1 cut(s) 1006
BsiEI CGRYCG 3 cut(s) 487, 529, 535
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 9 cut(s) 243, 374, 402, 483, 525, 546, 702, 720, 846
BsiWI CGTACG 1 cut(s) 927
BslI CCNNNNNNNGG 7 cut(s) 401, 477, 493, 694, 695, 790, 793
BsnI GGCC 8 cut(s) 382, 405, 486, 498, 528, 534, 579, 759
Bsp1286I GDGCHC 4 cut(s) 368, 701, 752, 914
Bsp13I TCCGGA 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 36, 894, 1007
Bsp19I CCATGG 1 cut(s) 255
BspANI GGCC 8 cut(s) 382, 405, 486, 498, 528, 534, 579, 759
BspCNI CTCAG 2 cut(s) 263, 877
BspDI ATCGAT 1 cut(s) 1006
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 2 cut(s) 531, 969
BspLI GGNNCC 4 cut(s) 38, 497, 589, 700
BspMAI CTGCAG 1 cut(s) 575
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 2 cut(s) 31, 44
BspT107I GGYRCC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 263
BsrFI RCCGGY 4 cut(s) 401, 545, 719, 845
BsrGI TGTACA 1 cut(s) 354
BssAI RCCGGY 4 cut(s) 401, 545, 719, 845
BssECI CCNNGG 8 cut(s) 255, 421, 502, 529, 580, 619, 830, 915
BssMI GATC 3 cut(s) 36, 894, 1007
BssT1I CCWWGG 3 cut(s) 255, 580, 915
Bst2UI CCWGG 3 cut(s) 384, 788, 1044
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 7 cut(s) 403, 407, 721, 799, 811, 875, 910
BstDEI CTNAG 2 cut(s) 250, 864
BstDSI CCRYGG 4 cut(s) 255, 421, 502, 529
BstEII GGTNACC 2 cut(s) 328, 982
BstF5I GGATG 3 cut(s) 387, 411, 1017
BstFNI CGCG 2 cut(s) 531, 969
BstH2I RGCGCY 2 cut(s) 402, 810
BstHHI GCGC 3 cut(s) 401, 542, 809
BstKTI GATC 3 cut(s) 39, 897, 1010
BstMBI GATC 3 cut(s) 36, 894, 1007
BstMCI CGRYCG 3 cut(s) 487, 529, 535
BstNI CCWGG 3 cut(s) 384, 788, 1044
BstPI GGTNACC 2 cut(s) 328, 982
BstSCI CCNGG 4 cut(s) 372, 382, 786, 1042
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 3 cut(s) 368, 752, 914
BstUI CGCG 2 cut(s) 531, 969
BstV1I GCAGC 9 cut(s) 247, 494, 524, 585, 710, 723, 827, 861, 870
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 36, 894
BstYI RGATCY 2 cut(s) 36, 894
BstZI CGGCCG 3 cut(s) 484, 526, 532
Bsu15I ATCGAT 1 cut(s) 1006
BsuRI GGCC 8 cut(s) 382, 405, 486, 498, 528, 534, 579, 759
BsuTUI ATCGAT 1 cut(s) 1006
BtgI CCRYGG 4 cut(s) 255, 421, 502, 529
BtgZI GCGATG 1 cut(s) 937
BtsCI GGATG 3 cut(s) 387, 411, 1017
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 7 cut(s) 403, 407, 721, 799, 811, 875, 910
CciNI GCGGCCGC 1 cut(s) 532
CfoI GCGC 3 cut(s) 401, 542, 809
Cfr10I RCCGGY 4 cut(s) 401, 545, 719, 845
Cfr13I GGNCC 3 cut(s) 57, 480, 496
Cfr42I CCGCGG 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 1006
CseI GACGC 1 cut(s) 715
CsiI ACCWGGT 1 cut(s) 1042
Csp6I GTAC 5 cut(s) 88, 355, 835, 886, 928
CviAII CATG 3 cut(s) 256, 289, 742
CviQI GTAC 5 cut(s) 88, 355, 835, 886, 928
DdeI CTNAG 2 cut(s) 250, 864
DpnI GATC 3 cut(s) 38, 896, 1009
DpnII GATC 3 cut(s) 36, 894, 1007
DraI TTTAAA 1 cut(s) 19
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 5 cut(s) 380, 403, 484, 526, 532
EagI CGGCCG 3 cut(s) 484, 526, 532
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 2 cut(s) 325, 573
EclXI CGGCCG 3 cut(s) 484, 526, 532
Eco130I CCWWGG 3 cut(s) 255, 580, 915
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 2 cut(s) 57, 480
Eco47III AGCGCT 1 cut(s) 808
Eco52I CGGCCG 3 cut(s) 484, 526, 532
Eco57I CTGAAG 1 cut(s) 290
Eco91I GGTNACC 2 cut(s) 328, 982
EcoO65I GGTNACC 2 cut(s) 328, 982
EcoRII CCWGG 3 cut(s) 382, 786, 1042
EcoT14I CCWWGG 3 cut(s) 255, 580, 915
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 3 cut(s) 255, 580, 915
FaeI CATG 3 cut(s) 259, 292, 745
FaiI YATR 6 cut(s) 54, 161, 236, 257, 290, 743
FatI CATG 3 cut(s) 255, 288, 741
FauI CCCGC 2 cut(s) 604, 962
FblI GTMKAC 1 cut(s) 657
FokI GGATG 3 cut(s) 374, 398, 1004
FriOI GRGCYC 1 cut(s) 701
FspBI CTAG 2 cut(s) 581, 605
FspI TGCGCA 1 cut(s) 541
GlaI GCGC 3 cut(s) 400, 541, 808
HaeII RGCGCY 2 cut(s) 402, 810
HaeIII GGCC 8 cut(s) 382, 405, 486, 498, 528, 534, 579, 759
HapII CCGG 9 cut(s) 243, 374, 402, 483, 525, 546, 702, 720, 846
HgaI GACGC 1 cut(s) 715
HhaI GCGC 3 cut(s) 401, 542, 809
Hin1II CATG 3 cut(s) 259, 292, 745
Hin6I GCGC 3 cut(s) 399, 540, 807
HinP1I GCGC 3 cut(s) 399, 540, 807
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 1 cut(s) 246
HpaII CCGG 9 cut(s) 243, 374, 402, 483, 525, 546, 702, 720, 846
HphI GGTGA 8 cut(s) 36, 322, 424, 607, 676, 976, 989, 1032
Hpy166II GTNNAC 3 cut(s) 60, 366, 658
Hpy188I TCNGA 3 cut(s) 31, 623, 831
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 3 cut(s) 60, 366, 658
Hpy99I CGWCG 4 cut(s) 659, 662, 883, 941
HpyAV CCTTC 6 cut(s) 81, 161, 178, 189, 523, 997
HpyCH4III ACNGT 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 250, 864
Hsp92II CATG 3 cut(s) 259, 292, 745
HspAI GCGC 3 cut(s) 399, 540, 807
Kpn2I TCCGGA 1 cut(s) 242
KroI GCCGGC 2 cut(s) 401, 719
KroNI GCCGGC 2 cut(s) 403, 721
KspI CCGCGG 1 cut(s) 532
Kzo9I GATC 3 cut(s) 36, 894, 1007
LmnI GCTCC 3 cut(s) 297, 704, 776
Lsp1109I GCAGC 9 cut(s) 247, 494, 524, 585, 710, 723, 827, 861, 870
LweI GCATC 3 cut(s) 396, 508, 960
MabI ACCWGGT 1 cut(s) 1042
MaeI CTAG 2 cut(s) 581, 605
MaeIII GTNAC 2 cut(s) 328, 982
MalI GATC 3 cut(s) 38, 896, 1009
MbiI CCGCTC 1 cut(s) 771
MboI GATC 3 cut(s) 36, 894, 1007
MboII GAAGA 5 cut(s) 66, 219, 283, 559, 889
MflI RGATCY 2 cut(s) 36, 894
MhlI GDGCHC 4 cut(s) 368, 701, 752, 914
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 3 cut(s) 49, 184, 1027
MluNI TGGCCA 1 cut(s) 382
Mox20I TGGCCA 1 cut(s) 382
MroI TCCGGA 1 cut(s) 242
MroNI GCCGGC 2 cut(s) 401, 719
MscI TGGCCA 1 cut(s) 382
MseI TTAA 5 cut(s) 5, 18, 693, 1026, 1051
Msp20I TGGCCA 1 cut(s) 382
MspA1I CMGCKG 3 cut(s) 531, 537, 576
MspI CCGG 9 cut(s) 243, 374, 402, 483, 525, 546, 702, 720, 846
MspR9I CCNGG 4 cut(s) 374, 384, 788, 1044
MvaI CCWGG 3 cut(s) 384, 788, 1044
MvnI CGCG 2 cut(s) 531, 969
NaeI GCCGGC 2 cut(s) 403, 721
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 36, 894, 1007
NgoMIV GCCGGC 2 cut(s) 401, 719
NlaIII CATG 3 cut(s) 259, 292, 745
NlaIV GGNNCC 4 cut(s) 38, 497, 589, 700
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 328, 982
NotI GCGGCCGC 1 cut(s) 532
NsbI TGCGCA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 968
PcsI WCGNNNNNNNCGW 3 cut(s) 723, 875, 936
PdiI GCCGGC 2 cut(s) 403, 721
PfeI GAWTC 1 cut(s) 246
Pfl23II CGTACG 1 cut(s) 927
PflMI CCANNNNNTGG 1 cut(s) 793
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 382, 786, 1042
PspEI GGTNACC 2 cut(s) 328, 982
PspGI CCWGG 3 cut(s) 382, 786, 1042
PspLI CGTACG 1 cut(s) 927
PspN4I GGNNCC 4 cut(s) 38, 497, 589, 700
PspPI GGNCC 3 cut(s) 57, 480, 496
PstI CTGCAG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 36, 894
RsaI GTAC 5 cut(s) 89, 356, 836, 887, 929
RsaNI GTAC 5 cut(s) 88, 355, 835, 886, 928
SacII CCGCGG 1 cut(s) 532
SalI GTCGAC 1 cut(s) 656
SaqAI TTAA 5 cut(s) 5, 18, 693, 1026, 1051
Sau3AI GATC 3 cut(s) 36, 894, 1007
Sau96I GGNCC 3 cut(s) 57, 480, 496
ScrFI CCNGG 4 cut(s) 374, 384, 788, 1044
SduI GDGCHC 4 cut(s) 368, 701, 752, 914
SexAI ACCWGGT 1 cut(s) 1042
SfaNI GCATC 3 cut(s) 396, 508, 960
SfcI CTRYAG 1 cut(s) 571
Sfr303I CCGCGG 1 cut(s) 532
SgrBI CCGCGG 1 cut(s) 532
SgrDI CGTCGACG 1 cut(s) 656
SinI GGWCC 2 cut(s) 57, 480
Sse9I AATT 3 cut(s) 49, 184, 1027
SspMI CTAG 2 cut(s) 581, 605
StyD4I CCNGG 4 cut(s) 372, 382, 786, 1042
StyI CCWWGG 3 cut(s) 255, 580, 915
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 3 cut(s) 516, 657, 1006
TaqII GACCGA 1 cut(s) 316
TasI AATT 3 cut(s) 49, 184, 1027
TatI WGTACW 1 cut(s) 354
TauI GCSGC 9 cut(s) 429, 489, 501, 531, 534, 537, 579, 588, 908
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 5 cut(s) 5, 18, 693, 1026, 1051
Tru9I TTAA 5 cut(s) 5, 18, 693, 1026, 1051
TseFI GTSAC 2 cut(s) 328, 982
TseI GCWGC 9 cut(s) 260, 507, 537, 573, 711, 723, 840, 849, 858
Tsp45I GTSAC 2 cut(s) 328, 982
Van91I CCANNNNNTGG 1 cut(s) 793
VneI GTGCAC 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 57, 480
XmaJI CCTAGG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 2 cut(s) 581, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.