Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21170937 .. 21172904

Gene Structure 1968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGTCTATTAGCTTTACTCAGATCGGAGGCAAAAACCCAGTTGCTGAATTTTCCAGGAGACCTCGTCCTGAGTTGCGTTTAACTCGGCCAAGCCGAGTAGGGTTCAGGGTGTTTGCCTCCGAGAGCAAGGCGGAGCCTGATCTTAGTGTTACTGTTAACGGGTTGCACATGCCCAACCCGTTTGTTATCGGGTCGGGTCCGCCAGGGACTAACTATACGGTGATGAAGAGGGCCTTTGATGAAGGCTGGGGTGCTGTGATTGCCAAAACTGTATCACTAGAGGCAGACAAAGTAAAAAATGTCACTCCTCGATATGCTCGGCTACGAGTAGATGGAAATGGCTCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTGATAAGTGATCGACCTCTTGACATTATGTTGAAAGAATTCAAGCAATTAAAGCAAGAGTATCCAGATAGGATTCTGATTGCTTCAATTATGGAGGAATACAACAAAGCTGGCTGGGAGGAACTTATTGACCGTGTCGAGCAAACTGGAGTTGATGCTCTTGAAATCAATTTTTCCTGTCCTCATGGTATGCCAGAGCGCAAGATGGGAGCTGCAGTTGGTCAAGACTGTGCACTTCTGGAAGAAGTTTGTGGCTGGATCAAGTTTGTCCCAAAGCCACAGTTCCTGTGTGGGCAAAGAAGACTCCTAACATTACTGACATCACACAGCCAGCTAGAGTCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

244

Amino Acids

27.1

Weight (kDa)

7.66

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	49 - 211	2e-08	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	134, 203
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	50, 422
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	418, 427, 471, 548
AjnI	CCWGG	2 cut(s)	56, 205
AluBI	AGCT	4 cut(s)	15, 494, 596, 718
AluI	AGCT	4 cut(s)	15, 494, 596, 718
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	2 cut(s)	47, 670
AoxI	GGCC	2 cut(s)	89, 234
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	50, 422
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	200, 234
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	329, 583
BciT130I	CCWGG	2 cut(s)	58, 207
BciVI	GTATCC	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	281, 719
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	597
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	2 cut(s)	58, 207
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 234
BmiI	GGNNCC	2 cut(s)	138, 201
BmrFI	CCNGG	2 cut(s)	58, 207
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	691
BpmI	CTGGAG	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 585, 615
Bse1I	ACTGG	2 cut(s)	41, 535
BseBI	CCWGG	2 cut(s)	58, 207
BseDI	CCNNGG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	35, 63, 360
BseNI	ACTGG	2 cut(s)	41, 535
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	583
BseYI	CCCAGC	2 cut(s)	249, 498
BshFI	GGCC	2 cut(s)	91, 236
BsiHKAI	GWGCWC	1 cut(s)	619
BslFI	GGGAC	2 cut(s)	223, 638
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	223, 638
BsnI	GGCC	2 cut(s)	91, 236
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	24, 142, 394, 642
Bsp1720I	GCTNAGC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	134, 203
BspANI	GGCC	2 cut(s)	91, 236
BspCNI	CTCAG	3 cut(s)	34, 64, 359
BspLI	GGNNCC	2 cut(s)	138, 201
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	41, 535
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	4 cut(s)	24, 142, 394, 642
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	58, 207
Bst4CI	ACNGT	6 cut(s)	157, 223, 274, 518, 614, 666
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	496, 716
BstDEI	CTNAG	4 cut(s)	21, 72, 146, 346
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	4 cut(s)	27, 145, 397, 645
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	24, 142, 394, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 436, 724
BstNI	CCWGG	2 cut(s)	58, 207
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	56, 205
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	91, 236
Cac8I	GCNNGC	2 cut(s)	496, 716
CaiI	CAGNNNCTG	2 cut(s)	47, 670
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	200, 234
CviAII	CATG	2 cut(s)	172, 569
DdeI	CTNAG	4 cut(s)	21, 72, 146, 346
DpnI	GATC	4 cut(s)	26, 144, 396, 644
DpnII	GATC	4 cut(s)	24, 142, 394, 642
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	149, 192
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	56, 205
FaeI	CATG	2 cut(s)	175, 572
FaiI	YATR	8 cut(s)	173, 219, 318, 380, 413, 476, 570, 575
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	2 cut(s)	223, 638
FatI	CATG	2 cut(s)	171, 568
Fnu4HI	GCNGC	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	2 cut(s)	281, 719
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	1 cut(s)	597
GsaI	CCCAGC	2 cut(s)	253, 502
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	91, 236
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	175, 572
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	457, 687, 722
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	160, 617
Hpy188I	TCNGA	5 cut(s)	24, 29, 124, 462, 731
Hpy188III	TCNNGA	6 cut(s)	71, 404, 449, 545, 608, 623
Hpy8I	GTNNAC	2 cut(s)	160, 617
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	6 cut(s)	157, 223, 274, 518, 614, 666
HpyCH4V	TGCA	3 cut(s)	169, 599, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 436, 724
HpyF3I	CTNAG	4 cut(s)	21, 72, 146, 346
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	175, 572
HspAI	GCGC	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	24, 142, 394, 642
LmnI	GCTCC	2 cut(s)	136, 593
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	281, 719
MaeIII	GTNAC	2 cut(s)	151, 304
MalI	GATC	4 cut(s)	26, 144, 396, 644
MboI	GATC	4 cut(s)	24, 142, 394, 642
MboII	GAAGA	3 cut(s)	241, 638, 696
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	6 cut(s)	50, 360, 422, 431, 471, 553
MlyI	GAGTC	2 cut(s)	681, 731
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	3 cut(s)	83, 159, 434
MspR9I	CCNGG	2 cut(s)	58, 207
MvaI	CCWGG	2 cut(s)	58, 207
MwoI	GCNNNNNNNGC	3 cut(s)	263, 436, 724
NdeII	GATC	4 cut(s)	24, 142, 394, 642
NlaIII	CATG	2 cut(s)	175, 572
NlaIV	GGNNCC	2 cut(s)	138, 201
NmeAIII	GCCGAG	3 cut(s)	67, 122, 301
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	2 cut(s)	66, 518
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	2 cut(s)	681, 730
PpsI	GAGTC	2 cut(s)	681, 730
Psp6I	CCWGG	2 cut(s)	56, 205
PspFI	CCCAGC	2 cut(s)	249, 498
PspGI	CCWGG	2 cut(s)	56, 205
PspN4I	GGNNCC	2 cut(s)	138, 201
PspPI	GGNCC	2 cut(s)	200, 234
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	2 cut(s)	47, 670
PsyI	GACNNNGTC	2 cut(s)	66, 518
SaqAI	TTAA	3 cut(s)	83, 159, 434
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	4 cut(s)	24, 142, 394, 642
Sau96I	GGNCC	2 cut(s)	200, 234
SchI	GAGTC	2 cut(s)	681, 731
ScrFI	CCNGG	2 cut(s)	58, 207
SduI	GDGCHC	1 cut(s)	619
SetI	ASST	6 cut(s)	17, 67, 403, 496, 598, 720
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	6 cut(s)	50, 360, 422, 431, 471, 553
SsiI	CCGC	2 cut(s)	134, 203
SspMI	CTAG	2 cut(s)	281, 719
StyD4I	CCNGG	2 cut(s)	56, 205
TaaI	ACNGT	6 cut(s)	157, 223, 274, 518, 614, 666
TaqI	TCGA	3 cut(s)	313, 397, 522
TasI	AATT	6 cut(s)	50, 360, 422, 431, 471, 553
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	83, 159, 434
Tru9I	TTAA	3 cut(s)	83, 159, 434
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	242, 258
Tth111I	GACNNNGTC	2 cut(s)	66, 518
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	50, 422
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	281, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.