Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

259839 .. 261151

Gene Structure 1313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACAGAAAAAACCAGTTTGGCACAAGCGTTACATTACATCTCACGCGTCCCAATTTGTTTGTTTTTTTTTTTTAATTTATTGAAAAACAGCTTTGGTCAGAGGTGTGGCGGAGAAGAGGAGGAGGAGGAGATGTCGCCGGTGGCGGGGAGACGGAAGTCGTGGAATGGGGGTTCGCAGCTGCAGGGTGTGCATTATCCAGCACCACTTGCCACTCATGAGGAGGTCGTGAAAAACGCTGTTGTTTTTTGGGACACTCTCCGGCGCTTCCATTTCATGATCAACACCTCCAAGTTTATGGTTCCTGTGATCGGAGGGAAGGAGCTAGATTTGCACATATTATATGTGGAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGAGGTGTTTTCATGTTCTCCCCCACAACAACGAGCGCTTCGTTTGTGCTGAGGAAACACTACTCAACCCTTCTCTACCATTACGAACAGGTTCACTATTTTAGGACACAGGGTCCTTTATCTACCCCAACACCCTCAGGTATTCATTTACTTCTTACTGCCCTGGTTTTTTACCCTCTTTTTTCTACTGATGCAATTGGCTTCTGCTTTTTGTATCTGGACTGCGGATATCATGACCTTTTTGCTCATAAGTGCTTCCTTTTTCCGGTATCTTTTTGCTCTACCGGCTTTTGCCTTTATATTTTTAGTTTTTGTTTCAGCATCTTCCATTTAATTAGTAACCGTTCTGAGTATGCAGAGAAACCAGAACTGGCGCTGGTGGAATATTCCCCCAAAGGCAAAGGGGCCAAAGGGAGCAAACCGATAAATGGTTGTCCGCTTTTGGTCACTGATGAAGGTATATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

283

Amino Acids

31.98

Weight (kDa)

7.17

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	83 - 156	3e-12	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	111, 146, 606, 818
AfeI	AGCGCT	1 cut(s)	418
AfiI	CCNNNNNNNGG	4 cut(s)	146, 311, 646, 809
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	543
AloI	GAACNNNNNNTCC	2 cut(s)	157, 189
AluBI	AGCT	3 cut(s)	93, 181, 325
AluI	AGCT	3 cut(s)	93, 181, 325
Alw26I	GTCTC	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	178, 181
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	3 cut(s)	267, 419, 757
AspS9I	GGNCC	2 cut(s)	494, 786
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	168, 190
BciT130I	CCWGG	1 cut(s)	545
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	182
BfoI	RGCGCY	3 cut(s)	268, 420, 758
BisI	GCNGC	2 cut(s)	179, 182
BlsI	GCNGC	2 cut(s)	180, 183
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	494
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	494, 786
BmiI	GGNNCC	3 cut(s)	303, 495, 787
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	562, 711
BoxI	GACNNNNGTC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 311, 646, 809
Bse118I	RCCGGY	2 cut(s)	139, 665
Bse1I	ACTGG	2 cut(s)	15, 756
Bse21I	CCTNAGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	543
BseLI	CCNNNNNNNGG	4 cut(s)	146, 311, 646, 809
BseMII	CTCAG	3 cut(s)	422, 531, 720
BseNI	ACTGG	2 cut(s)	15, 756
BseRI	GAGGAG	5 cut(s)	134, 137, 140, 143, 236
BseXI	GCAGC	2 cut(s)	168, 190
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	788
BsiSI	CCGG	4 cut(s)	140, 262, 647, 666
BslFI	GGGAC	2 cut(s)	35, 266
BslI	CCNNNNNNNGG	4 cut(s)	146, 311, 646, 809
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	35, 266
BsnI	GGCC	1 cut(s)	788
Bsp143I	GATC	2 cut(s)	279, 309
BspACI	CCGC	4 cut(s)	111, 146, 606, 818
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	3 cut(s)	423, 530, 721
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	3 cut(s)	217, 276, 613
BspLI	GGNNCC	3 cut(s)	303, 495, 787
BspMAI	CTGCAG	1 cut(s)	186
BsrFI	RCCGGY	2 cut(s)	139, 665
BsrI	ACTGG	2 cut(s)	15, 756
BssAI	RCCGGY	2 cut(s)	139, 665
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	2 cut(s)	279, 309
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	190, 209
BstDEI	CTNAG	3 cut(s)	431, 517, 729
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	3 cut(s)	268, 420, 758
BstHHI	GCGC	3 cut(s)	267, 419, 757
BstKTI	GATC	2 cut(s)	282, 312
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	279, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 209, 331, 666
BstNI	CCWGG	1 cut(s)	545
BstPAI	GACNNNNGTC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	168, 190
BstXI	CCANNNNNNTGG	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	828
CciI	TCATGA	3 cut(s)	217, 276, 613
CfoI	GCGC	3 cut(s)	267, 419, 757
Cfr10I	RCCGGY	2 cut(s)	139, 665
Cfr13I	GGNCC	2 cut(s)	494, 786
CseI	GACGC	1 cut(s)	37
CviAII	CATG	4 cut(s)	218, 277, 394, 614
CviJI	RGCY	6 cut(s)	93, 181, 325, 582, 669, 788
CviKI_1	RGCY	6 cut(s)	93, 181, 325, 582, 669, 788
DdeI	CTNAG	3 cut(s)	431, 517, 729
DpnI	GATC	2 cut(s)	281, 311
DpnII	GATC	2 cut(s)	279, 309
DriI	GACNNNNNGTC	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	494
Eco47III	AGCGCT	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	543
EcoRV	GATATC	1 cut(s)	611
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	4 cut(s)	221, 280, 397, 617
FaqI	GGGAC	2 cut(s)	35, 266
FatI	CATG	4 cut(s)	217, 276, 393, 613
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	179, 182
Fsp4HI	GCNGC	2 cut(s)	179, 182
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	3 cut(s)	266, 418, 756
GluI	GCNGC	2 cut(s)	179, 182
HaeII	RGCGCY	3 cut(s)	268, 420, 758
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	4 cut(s)	140, 262, 647, 666
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	3 cut(s)	267, 419, 757
Hin1II	CATG	4 cut(s)	221, 280, 397, 617
Hin6I	GCGC	3 cut(s)	265, 417, 755
HinP1I	GCGC	3 cut(s)	265, 417, 755
HpaII	CCGG	4 cut(s)	140, 262, 647, 666
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	102, 314, 730
Hpy188III	TCNNGA	5 cut(s)	218, 229, 277, 599, 614
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	3 cut(s)	313, 461, 830
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4V	TGCA	6 cut(s)	184, 193, 334, 359, 575, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 209, 331, 666
HpyF3I	CTNAG	3 cut(s)	431, 517, 729
Hsp92II	CATG	4 cut(s)	221, 280, 397, 617
HspAI	GCGC	3 cut(s)	265, 417, 755
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	279, 309
LmnI	GCTCC	2 cut(s)	322, 795
Lsp1109I	GCAGC	2 cut(s)	168, 190
LweI	GCATC	2 cut(s)	562, 711
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	3 cut(s)	30, 719, 826
MalI	GATC	2 cut(s)	281, 311
MboI	GATC	2 cut(s)	279, 309
MboII	GAAGA	3 cut(s)	128, 376, 697
MfeI	CAATTG	1 cut(s)	576
MluCI	AATT	4 cut(s)	54, 76, 576, 714
MluI	ACGCGT	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	75, 713
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	4 cut(s)	140, 262, 647, 666
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	190, 209, 331, 666
NdeII	GATC	2 cut(s)	279, 309
NlaIII	CATG	4 cut(s)	221, 280, 397, 617
NlaIV	GGNNCC	3 cut(s)	303, 495, 787
NmuCI	GTSAC	1 cut(s)	826
PagI	TCATGA	3 cut(s)	217, 276, 613
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	180, 183
PpuMI	RGGWCCY	1 cut(s)	494
PshAI	GACNNNNGTC	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	3 cut(s)	303, 495, 787
PspPI	GGNCC	2 cut(s)	494, 786
PspPPI	RGGWCCY	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	75, 713
SatI	GCNGC	2 cut(s)	179, 182
Sau3AI	GATC	2 cut(s)	279, 309
Sau96I	GGNCC	2 cut(s)	494, 786
ScrFI	CCNGG	1 cut(s)	545
SfaNI	GCATC	2 cut(s)	562, 711
SfcI	CTRYAG	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	54, 76, 576, 714
SsiI	CCGC	4 cut(s)	111, 146, 606, 818
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	725
TasI	AATT	4 cut(s)	54, 76, 576, 714
Tru1I	TTAA	2 cut(s)	75, 713
Tru9I	TTAA	2 cut(s)	75, 713
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	2 cut(s)	178, 181
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	4 cut(s)	265, 382, 515, 849
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.