pycom15g00800

Prostaglandin E synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
441220 .. 441569
350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGTAGCAAAGTACGCTGGAGCTGCTGCTACGTATTTTCCTTGTATGGAGCTGCAGAAACATGGGTGGATGCTCTTAAGGGCAGACAATTTCTTGGTAATGTTTCTTCTTAAATATTGTATACTATTAAGTGGATCAAATCCTAATTTGGCCGATTTTGCTGTATTTGGTGTTTTGAGGCCTATTCTGCACCTTAAATCTGGCAAAGATATGGTGGAGAACACGCGGATCGGTGAATGGTATACTCGAATGGAAAGTGCTGTGGGAGAGCCTGCCAGAGCCGGAGCCTGA

Protein Analysis

97

Amino Acids

10.69

Weight (kDa)

8.66

Isoelectric Point (pI)

24.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 242
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 142, 236
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 14
AflII CTTAAG 1 cut(s) 76
AluBI AGCT 2 cut(s) 23, 52
AluI AGCT 2 cut(s) 23, 52
AlwI GGATC 2 cut(s) 142, 236
AoxI GGCC 2 cut(s) 150, 179
ApeKI GCWGC 3 cut(s) 23, 26, 52
AsuHPI GGTGA 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbvI GCAGC 3 cut(s) 10, 13, 39
BfmI CTRYAG 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 76
BisI GCNGC 3 cut(s) 24, 27, 53
BlsI GCNGC 3 cut(s) 25, 28, 54
BmiI GGNNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 33
BseGI GGATG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 10, 13, 39
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 152, 181
BsiSI CCGG 1 cut(s) 282
BsnI GGCC 2 cut(s) 152, 181
Bsp143I GATC 2 cut(s) 134, 228
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 152, 181
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 2 cut(s) 142, 236
BspTI CTTAAG 1 cut(s) 76
BssMI GATC 2 cut(s) 134, 228
BssNAI GTATAC 2 cut(s) 122, 243
Bst1107I GTATAC 2 cut(s) 122, 243
BstAFI CTTAAG 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 137, 231
BstMBI GATC 2 cut(s) 134, 228
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 158, 187
BstSFI CTRYAG 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 33
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 10, 13, 39
BstZ17I GTATAC 2 cut(s) 122, 243
BsuRI GGCC 2 cut(s) 152, 181
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 23, 52, 152, 181, 271, 281, 287
CviKI_1 RGCY 7 cut(s) 23, 52, 152, 181, 271, 281, 287
CviQI GTAC 1 cut(s) 13
DpnI GATC 2 cut(s) 136, 230
DpnII GATC 2 cut(s) 134, 228
EaeI YGGCCR 1 cut(s) 150
Eco105I TACGTA 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 181
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 47, 63, 122, 212, 243
FatI CATG 1 cut(s) 61
FblI GTMKAC 2 cut(s) 121, 242
Fnu4HI GCNGC 3 cut(s) 24, 27, 53
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 24, 27, 53
GluI GCNGC 3 cut(s) 24, 27, 53
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 152, 181
HapII CCGG 1 cut(s) 282
Hin1II CATG 1 cut(s) 65
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 122, 243
Hpy8I GTNNAC 2 cut(s) 122, 243
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 55, 190
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 158, 187
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 2 cut(s) 134, 228
LmnI GCTCC 3 cut(s) 20, 49, 284
LpnPI CCDG 3 cut(s) 3, 186, 285
Lsp1109I GCAGC 3 cut(s) 10, 13, 39
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 32
MalI GATC 2 cut(s) 136, 230
MboI GATC 2 cut(s) 134, 228
MboII GAAGA 1 cut(s) 98
MluCI AATT 2 cut(s) 88, 145
MnlI CCTC 1 cut(s) 171
MseI TTAA 4 cut(s) 77, 111, 128, 195
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 158, 187
NdeII GATC 2 cut(s) 134, 228
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 286
PceI AGGCCT 1 cut(s) 181
PkrI GCNGC 3 cut(s) 25, 28, 54
Ppu21I YACGTR 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 286
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 77, 111, 128, 195
SatI GCNGC 3 cut(s) 24, 27, 53
Sau3AI GATC 2 cut(s) 134, 228
SetI ASST 4 cut(s) 25, 35, 54, 195
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 53
SgeI CNNG 9 cut(s) 30, 54, 74, 106, 213, 235, 237, 258, 284
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
SnaBI TACGTA 1 cut(s) 33
Sse9I AATT 2 cut(s) 88, 145
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 116
StuI AGGCCT 1 cut(s) 181
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 88, 145
Tru1I TTAA 4 cut(s) 77, 111, 128, 195
Tru9I TTAA 4 cut(s) 77, 111, 128, 195
TseI GCWGC 3 cut(s) 23, 26, 52
Vha464I CTTAAG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 121, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.