pycom15g03270

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
2045936 .. 2046778
843 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGAGCTGCTTTGATGTTAAAAGAATCTTTAATTCTGTATATAGTCATCTTTGCATTTCCATAGTGAGTGACACTAAAGAAACTTTTGTGTACCGGTGTCACTATACCTATTTTTACAAACGTCCTCTTGTTTGCTTGGTTGACTGGCTCCCTCAACTAATATGCAAATATGCAATGTATATCGATCCCTTATGCAAAACAATGACTTCCAAGTCAATGAATAGGACAGCACAATTACCATTCAATTTACTTGACTTGACTGACCAAAAAAAAAAATTTGATTGCGGCAATTCCACAGACCATCCTGCATTTCTTGTTCATCATTTCTTTTTCGACTATCGGCTAGCTTCAATAGCTTATGAATATGTGGACGGAGAGGTTAAACATGTTTTGGGCGCCAAGAAAGATATTGAAGAATTTGCTGGCAATCTCAAAGCTATTCAAGCCGTTCTCGAAGATGCGTACAGCTCAAAGACATATCAGTTGAATATAGAGTACTGCCAAGAAGATTACATGAACCAAAGACGATACATCTTGACTGAGTTGTTTTTCAAACTAAATTACAAACTATATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

193

Amino Acids

22.8

Weight (kDa)

7.55

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 275, 416
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 3 cut(s) 92, 464, 497
AflIII ACRYGT 1 cut(s) 385
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 6 cut(s) 244, 351, 413, 443, 487, 553
AluBI AGCT 5 cut(s) 6, 347, 356, 437, 468
AluI AGCT 5 cut(s) 6, 347, 356, 437, 468
AlwI GGATC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 275, 416
AsiGI ACCGGT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 398
AsuNHI GCTAGC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 395
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 431
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 2 cut(s) 7, 286
BlsI GCNGC 2 cut(s) 8, 287
BmcAI AGTACT 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 149, 397
BmsI GCATC 1 cut(s) 448
BmtI GCTAGC 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 180
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 183
BsiSI CCGG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 532
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 149, 397
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 345, 424
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 353, 443
BstNSI RCATGY 1 cut(s) 389
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 345, 424
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 3 cut(s) 91, 463, 496
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 2 cut(s) 386, 514
CviJI RGCY 8 cut(s) 6, 148, 343, 347, 356, 437, 446, 468
CviKI_1 RGCY 8 cut(s) 6, 148, 343, 347, 356, 437, 446, 468
CviQI GTAC 3 cut(s) 91, 463, 496
DdeI CTNAG 1 cut(s) 540
DinI GGCGCC 1 cut(s) 397
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
FaeI CATG 2 cut(s) 389, 517
FatI CATG 2 cut(s) 385, 513
Fnu4HI GCNGC 2 cut(s) 7, 286
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 7, 286
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 7, 286
HaeII RGCGCY 1 cut(s) 399
HapII CCGG 1 cut(s) 94
HhaI GCGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 2 cut(s) 389, 517
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 24
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 3 cut(s) 91, 142, 370
Hpy188III TCNNGA 2 cut(s) 452, 535
Hpy8I GTNNAC 3 cut(s) 91, 142, 370
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 54, 165, 173, 195, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 443
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 2 cut(s) 389, 517
HspAI GCGC 1 cut(s) 396
KasI GGCGCC 1 cut(s) 395
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 107, 130, 318, 408
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 68, 98
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 425, 467, 518
MluCI AATT 7 cut(s) 31, 233, 244, 275, 289, 416, 559
Mly113I GGCGCC 1 cut(s) 396
MnlI CCTC 3 cut(s) 135, 162, 370
MseI TTAA 3 cut(s) 18, 30, 381
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 353, 443
NarI GGCGCC 1 cut(s) 396
NdeII GATC 1 cut(s) 184
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 2 cut(s) 389, 517
NlaIV GGNNCC 2 cut(s) 149, 397
NmuCI GTSAC 2 cut(s) 68, 98
NspI RCATGY 1 cut(s) 389
PciI ACATGT 1 cut(s) 385
PfeI GAWTC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 2 cut(s) 8, 287
PluTI GGCGCC 1 cut(s) 399
PscI ACATGT 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 149, 397
RsaI GTAC 3 cut(s) 92, 464, 497
RsaNI GTAC 3 cut(s) 91, 463, 496
SaqAI TTAA 3 cut(s) 18, 30, 381
SatI GCNGC 2 cut(s) 7, 286
Sau3AI GATC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 497
SetI ASST 8 cut(s) 8, 110, 124, 349, 358, 381, 439, 470
SfaNI GCATC 1 cut(s) 448
SfoI GGCGCC 1 cut(s) 397
Sse9I AATT 7 cut(s) 31, 233, 244, 275, 289, 416, 559
SsiI CCGC 1 cut(s) 285
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 1 cut(s) 344
TaiI ACGT 1 cut(s) 124
TaqI TCGA 3 cut(s) 183, 333, 453
TasI AATT 7 cut(s) 31, 233, 244, 275, 289, 416, 559
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 18, 30, 381
Tru9I TTAA 3 cut(s) 18, 30, 381
TseFI GTSAC 2 cut(s) 68, 98
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 2 cut(s) 68, 98
TspDTI ATGAA 4 cut(s) 233, 308, 375, 530
TspGWI ACGGA 1 cut(s) 387
XapI RAATTY 2 cut(s) 275, 416
XceI RCATGY 1 cut(s) 389
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.