pycom15g03370

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
2078166 .. 2079399
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGGGTTCCAGTTTCTCTTCACAAGGGCTGGTTTTGATTGTCGTCGCTGTCTCTTTGTTGGCGGTGGGGCAGGCTAAAACTGTCATTGTAGGAGGCTCCGAAGGTTGGCGTTTCGGCTTCAACTACACTGACTGGACTCTCAAAAATGGCCCCTTTTACATAAAGGTCACGCTACAGGTAAGTCAACCGGCTTTGTGGTGCCGATCAACCGTACAGTGGAGCTACATAACATGTGACTTCCGGAGGGAAAAGCTGGTGGGAAAAGCCACGCAGGGAGGCGGTCAGGGGTTTAAGTTCGTGCTGAACCAGTGGAGGCCACACTACTTTGCTTGTGGTCAGGGAGCCAACAGGTCTCACTGCAACCAGGGGTTGATGAAGTTCTTCGCCTGCCAAATAACCCCTAATTATCACAAAACTGTCAATTACCCGCTCAACTTTACTAAACTTCACAATGGGTTAACAATGATGTGGTTTAAATTCGTCTTTGGCGACAATCCAAACCGTGGTACTAAATGGCTACCCGGTCACGTACTTGGCAATTTTTATGTGTTTATACTAAAACATGTTGAAAATCACCAATTAAGTAATTACATAATCATTTCCACTTCAATCAATAACTCTAACGTAGTAGACTTGATTCGAAGAGAGAGACCAACGATTTCCATTTTGGGAGAGAGGTATGTTGAAGAAGGAGGCGAACGATTTTCATTTGGAGGAGATTACAAGGTGACTAGAAAGAGGCGAACAAAATTCTGGGAATTAATAGGAATAAGTAACTTCATGAATGACATCCTTCTAATCCCCTATTATAGTTATCCAATCCCATCCAATCCTAATTACCAATCAAACACTTGCCGTATTTACCAAGTTCATAGACCCCAAGCAAAAGGAAAACAACATTCTCCAGCAGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

306

Amino Acids

34.96

Weight (kDa)

9.82

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 630
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 3 cut(s) 62, 279, 428
AcsI RAATTY 2 cut(s) 476, 749
AfaI GTAC 3 cut(s) 213, 508, 531
AfiI CCNNNNNNNGG 3 cut(s) 105, 216, 503
AflIII ACRYGT 2 cut(s) 230, 562
AgsI TTSAA 4 cut(s) 121, 569, 609, 686
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 2 cut(s) 222, 253
AluI AGCT 2 cut(s) 222, 253
Alw26I GTCTC 3 cut(s) 55, 357, 643
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 2 cut(s) 148, 314
ApoI RAATTY 2 cut(s) 476, 749
AseI ATTAAT 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 566, 739
AsuII TTCGAA 1 cut(s) 640
BanI GGYRCC 1 cut(s) 198
BccI CCATC 1 cut(s) 832
BceAI ACGGC 1 cut(s) 840
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 3 cut(s) 55, 357, 643
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 365, 522
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 5 cut(s) 7, 97, 151, 200, 343
BmrFI CCNGG 2 cut(s) 365, 522
BpmI CTGGAG 1 cut(s) 888
Bpu14I TTCGAA 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 529
BsaI GGTCTC 2 cut(s) 357, 643
BsaJI CCNNGG 2 cut(s) 364, 502
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 216, 503
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 3 cut(s) 9, 137, 307
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 364, 502
BseGI GGATG 2 cut(s) 789, 824
BseLI CCNNNNNNNGG 3 cut(s) 105, 216, 503
BseNI ACTGG 3 cut(s) 9, 137, 307
BseRI GAGGAG 1 cut(s) 729
BshFI GGCC 2 cut(s) 150, 316
BshNI GGYRCC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 188, 241, 522
BslI CCNNNNNNNGG 3 cut(s) 105, 216, 503
BsmAI GTCTC 3 cut(s) 55, 357, 643
BsnI GGCC 2 cut(s) 150, 316
Bso31I GGTCTC 2 cut(s) 357, 643
Bsp119I TTCGAA 1 cut(s) 640
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 3 cut(s) 62, 279, 428
BspANI GGCC 2 cut(s) 150, 316
BspEI TCCGGA 1 cut(s) 240
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 5 cut(s) 7, 97, 151, 200, 343
BspT104I TTCGAA 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 2 cut(s) 357, 643
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 3 cut(s) 9, 137, 307
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 364, 502
BssMI GATC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 5 cut(s) 82, 211, 216, 418, 503
Bst6I CTCTTC 2 cut(s) 22, 637
BstBAI YACGTR 1 cut(s) 529
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 72, 388
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 789, 824
BstKTI GATC 1 cut(s) 206
BstMAI GTCTC 3 cut(s) 55, 357, 643
BstMBI GATC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 2 cut(s) 234, 566
BstSCI CCNGG 2 cut(s) 363, 520
BstSFI CTRYAG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 150, 316
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 2 cut(s) 789, 824
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 4 cut(s) 126, 221, 314, 355
Cac8I GCNNGC 2 cut(s) 72, 388
CciI TCATGA 1 cut(s) 780
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 212, 507, 530
CviAII CATG 3 cut(s) 231, 563, 781
CviQI GTAC 3 cut(s) 212, 507, 530
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 22, 637
EarI CTCTTC 2 cut(s) 22, 637
Eco31I GGTCTC 2 cut(s) 357, 643
EcoRII CCWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 234, 566, 784
FatI CATG 3 cut(s) 230, 562, 780
FauI CCCGC 1 cut(s) 435
FblI GTMKAC 1 cut(s) 630
FokI GGATG 2 cut(s) 776, 811
FspBI CTAG 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 2 cut(s) 150, 316
HapII CCGG 3 cut(s) 188, 241, 522
Hin1II CATG 3 cut(s) 234, 566, 784
HincII GTYRAC 2 cut(s) 185, 459
HindII GTYRAC 2 cut(s) 185, 459
HinfI GANTC 2 cut(s) 136, 637
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 3 cut(s) 188, 241, 522
HphI GGTGA 2 cut(s) 566, 739
Hpy166II GTNNAC 3 cut(s) 185, 459, 631
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 241, 781
Hpy8I GTNNAC 3 cut(s) 185, 459, 631
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 95, 683, 803
HpyCH4III ACNGT 5 cut(s) 82, 211, 216, 418, 503
HpyCH4IV ACGT 2 cut(s) 528, 624
HpyCH4V TGCA 1 cut(s) 360
HpySE526I ACGT 2 cut(s) 528, 624
Hsp92II CATG 3 cut(s) 234, 566, 784
Kpn2I TCCGGA 1 cut(s) 240
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 101, 219, 341
MaeI CTAG 1 cut(s) 732
MaeII ACGT 2 cut(s) 528, 624
MaeIII GTNAC 5 cut(s) 166, 233, 524, 727, 773
MalI GATC 1 cut(s) 205
MbiI CCGCTC 1 cut(s) 430
MboI GATC 1 cut(s) 203
MboII GAAGA 4 cut(s) 9, 373, 654, 698
MluCI AATT 9 cut(s) 403, 421, 476, 538, 578, 586, 749, 758, 835
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 8 cut(s) 86, 237, 269, 306, 669, 686, 707, 732
MroI TCCGGA 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 5 cut(s) 291, 458, 474, 581, 761
MspI CCGG 3 cut(s) 188, 241, 522
MspR9I CCNGG 2 cut(s) 365, 522
MvaI CCWGG 1 cut(s) 365
NciI CCSGG 1 cut(s) 522
NdeII GATC 1 cut(s) 203
NlaIII CATG 3 cut(s) 234, 566, 784
NlaIV GGNNCC 5 cut(s) 7, 97, 151, 200, 343
NmuCI GTSAC 4 cut(s) 166, 233, 524, 727
NspI RCATGY 2 cut(s) 234, 566
NspV TTCGAA 1 cut(s) 640
PagI TCATGA 1 cut(s) 780
PciI ACATGT 2 cut(s) 230, 562
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 637
PflMI CCANNNNNTGG 1 cut(s) 503
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 529
PscI ACATGT 2 cut(s) 230, 562
PshBI ATTAAT 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 5 cut(s) 7, 97, 151, 200, 343
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 3 cut(s) 213, 508, 531
RsaNI GTAC 3 cut(s) 212, 507, 530
SaqAI TTAA 5 cut(s) 291, 458, 474, 581, 761
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 365, 522
SfcI CTRYAG 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 640
Sse9I AATT 9 cut(s) 403, 421, 476, 538, 578, 586, 749, 758, 835
SsiI CCGC 3 cut(s) 62, 279, 428
SspMI CTAG 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 363, 520
TaaI ACNGT 5 cut(s) 82, 211, 216, 418, 503
TaiI ACGT 2 cut(s) 531, 627
TaqI TCGA 1 cut(s) 640
TasI AATT 9 cut(s) 403, 421, 476, 538, 578, 586, 749, 758, 835
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 5 cut(s) 291, 458, 474, 581, 761
Tru9I TTAA 5 cut(s) 291, 458, 474, 581, 761
TscAI CASTG 4 cut(s) 133, 221, 314, 362
TseFI GTSAC 4 cut(s) 166, 233, 524, 727
Tsp45I GTSAC 4 cut(s) 166, 233, 524, 727
TspDTI ATGAA 5 cut(s) 389, 696, 769, 797, 860
TspRI CASTG 4 cut(s) 133, 221, 314, 362
Van91I CCANNNNNTGG 1 cut(s) 503
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 2 cut(s) 476, 749
XceI RCATGY 2 cut(s) 234, 566
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.