pycom15g03550

Belongs to the ClpA ClpB family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
2174142 .. 2174534
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGAGATCACATCTAAGCCAACCGAGTTGGATGAGGTAGACCCAGCTGTGTTGAAGTTGGAGATGGAGAAGCTATCAGTGCAAAATGACACTGATAAATCATCGAAAGAAAGGTTAAGCAAGTTGGAAAGTGACCTGGCAGTGCTGAAACAGAAACAGAAAGAACTAAATGAACAATGGGATCATGAGAAGGCTCTCATGACTCGCATACGATCAATTAAAGAAGAGATTGATAGAGTAAGTCAAGAGATGGAAGCTGCTGAACGAGACTACAACCTAAATCGTGCTGCTTACAATGCCAGTTAG

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

4.89

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AclWI GGATC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 3 cut(s) 47, 73, 257
AluI AGCT 3 cut(s) 47, 73, 257
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 257, 287
BbvI GCAGC 2 cut(s) 244, 274
BccI CCATC 2 cut(s) 58, 244
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 261
BisI GCNGC 2 cut(s) 258, 288
BlsI GCNGC 2 cut(s) 259, 289
Bme1390I CCNGG 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 244, 274
BseYI CCCAGC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 6, 181, 212
BspHI TCATGA 2 cut(s) 184, 198
BspPI GGATC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 300
BssMI GATC 3 cut(s) 6, 181, 212
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 9, 184, 215
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 3 cut(s) 6, 181, 212
BstMWI GCNNNNNNNGC 2 cut(s) 79, 296
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 244, 274
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 84, 90, 147
CciI TCATGA 2 cut(s) 184, 198
CviAII CATG 2 cut(s) 185, 199
CviJI RGCY 5 cut(s) 19, 47, 73, 194, 257
CviKI_1 RGCY 5 cut(s) 19, 47, 73, 194, 257
DdeI CTNAG 1 cut(s) 15
DpnI GATC 3 cut(s) 8, 183, 214
DpnII GATC 3 cut(s) 6, 181, 212
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 188, 202
FaiI YATR 3 cut(s) 186, 200, 209
FatI CATG 2 cut(s) 184, 198
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 258, 288
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 258, 288
GluI GCNGC 2 cut(s) 258, 288
GsaI CCCAGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 188, 202
HinfI GANTC 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 185, 199, 245
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 296
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 2 cut(s) 188, 202
Kzo9I GATC 3 cut(s) 6, 181, 212
LpnPI CCDG 3 cut(s) 57, 122, 149
Lsp1109I GCAGC 2 cut(s) 244, 274
MaeIII GTNAC 1 cut(s) 131
MalI GATC 3 cut(s) 8, 183, 214
MboI GATC 3 cut(s) 6, 181, 212
MboII GAAGA 1 cut(s) 236
MluCI AATT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 3 cut(s) 9, 39, 105
MnlI CCTC 1 cut(s) 28
MseI TTAA 2 cut(s) 116, 219
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 79, 296
NdeII GATC 3 cut(s) 6, 181, 212
NlaIII CATG 2 cut(s) 188, 202
NmuCI GTSAC 1 cut(s) 131
PagI TCATGA 2 cut(s) 184, 198
PkrI GCNGC 2 cut(s) 259, 289
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 116, 219
SatI GCNGC 2 cut(s) 258, 288
Sau3AI GATC 3 cut(s) 6, 181, 212
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 137
SetI ASST 7 cut(s) 39, 49, 75, 116, 138, 259, 279
Sse9I AATT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 135
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 216
Tru1I TTAA 2 cut(s) 116, 219
Tru9I TTAA 2 cut(s) 116, 219
TscAI CASTG 3 cut(s) 84, 97, 147
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 257, 287
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 3 cut(s) 84, 97, 147
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.