Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2208244 .. 2210377

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGTAACACAATTAGATTCGACTGGTCGACAATTTTTGGCTGAATTCAGACATGTTAGAAGGATTGCATGGGAGAGAGAGGCTGAGATCTTGGAGTTTTCATTGTGGGTGGTAGGGGAGGTGGCAGTGGTGGAGCCAAAAATTTACAACGATGGGGTCAGAAATTTACCCTCGGTCAGTGACGTCATCATCGGAGTACTGGACACCGGCATCTGGCCTAAGAGCAAGAGCTTCGATGACACCGGATTTGGACTCATGCCTATGTATTTGCTTCCCCCAGTAAATAGATTCGTACCCACCCAAATTAGCACAGGAAGAAATCCCTGGCTAAAACACCAATTTCTCCCAAACCCGTTTATAATGCTTGTCCATGAAACCACGTCCCTTTTTGGCATGATTTCAAATAGCAAAACAGCAGAACCCATATCCCTATTCTTCACAAACTCATCAATCATCGCATTCCACGCAACCACACATGGTTCAAATTCCTCAAACACCTTGCGTGTCTTGCACAACTTAGGTCGCACAAAGTGTATGAGACCCATCAATGAGTCTAAAGAATCCAAATCCCCGCGCGACAACGACGGAGTGCCGGTCGATTCGACGCTGCCAGGTGGTAGATTCACGGTGGTGGGAAGATTTAGCAGAGGGAGAAGAGATGCTGATAGAGTGATGGCTAACAAATGGAGCAACATCTCCTTTTTCTTCTTCTTGTTTGGGGCTGTCGGCACAAGGTTATTGGGGTCAAGGAATCCCATTGCCCCCACCTTGGCTTCGCTACTGGATAGGGTGGCTGGAGTTTCTTGCTGCGAAATTTTATTTTTGGTTTTACAAAATAAGTACATAAAAAAAGCCTCTCACACAGCTTGCATGTGTCTAAACTACTTCACATTTGATCAATATGTTCTATTATCTCTATTAATTAATGACGCTCTTTTTTACACAAAAAAAATGATGGGCAATAATGTAAATTCACAGGTCCAAATTTTACTGTTTTTTATTGAAGCCTCACCTAGATGTGATGTTAAAATACCTCCAATATTAAAATATAAAAAAAATAAAAAACCTCCCACTCCCCCCACGTTCTCTCTTTCTCTCCCTTTCTCTCCTCATTTTCTAAAAAAAATGTGTTCATATACACAAAAAGATGATGGATATATTCTTAGGGAAATGAAACAAACACATTATTCTTTTTCTTTTGCACACTTTTCCTATTCTCTCCCGACCCTCCTTTGTTTAAAAAAAAAAAAAAATCCAAAAATGAGGAGAGCGGGGTCATGGTCAAATTTTAATAATTTCACGTACGTACGAATTGGAGGAAGCATTAGAACTAAACAAAGATTAAGGATTCCATTTGTAACTGAAAATGAAGATCAAGGGTTATCAAGGGGCGTTGGGTGCATTTCGCACTTCGTAAAGATTCCTAGACAAAATAATATCCCCATTAGCCTTCAATTGTGGGGATGGGAATTGGGAAACAAAAGATTCCTTAATTATATTTTAACTGTCTTGTGTATACATGAGATTAGGAAATTAATATTTTTGTGGCTCTCATTCTGTAACTTCTTTCAAGGATCTGAATCATTTATATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0016787 GO:0017171 GO:0019538 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0048046 GO:0048316 GO:0048359 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

532

Amino Acids

60.67

Weight (kDa)

9.82

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AatII	GACGTC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	1271
AccI	GTMKAC	2 cut(s)	28, 1516
AccII	CGCG	2 cut(s)	574, 576
AciI	CCGC	2 cut(s)	572, 1271
AclWI	GGATC	1 cut(s)	1582
AcsI	RAATTY	8 cut(s)	44, 141, 163, 484, 813, 970, 984, 1285
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	531
AfaI	GTAC	5 cut(s)	198, 294, 842, 1304, 1308
AfiI	CCNNNNNNNGG	2 cut(s)	213, 769
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	402, 483, 1004, 1454, 1571
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	2 cut(s)	323, 610
AleI	CACNNNNGTG	1 cut(s)	629
AluBI	AGCT	2 cut(s)	231, 866
AluI	AGCT	2 cut(s)	231, 866
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	1582
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	607, 807
ApoI	RAATTY	8 cut(s)	44, 141, 163, 484, 813, 970, 984, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AseI	ATTAAT	3 cut(s)	920, 924, 1535
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	979
AsuHPI	GGTGA	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	979
BbvI	GCAGC	2 cut(s)	594, 794
BccI	CCATC	6 cut(s)	146, 551, 667, 949, 1145, 1458
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	2 cut(s)	325, 612
BclI	TGATCA	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	1014, 1425
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	2 cut(s)	608, 808
BlsI	GCNGC	2 cut(s)	609, 809
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	325, 612
Bme18I	GGWCC	1 cut(s)	979
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	979
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	325, 612
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	219, 649
BmuI	ACTGGG	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	816
BsaAI	YACGTR	2 cut(s)	1302, 1306
BsaBI	GATNNNNATC	1 cut(s)	1579
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	171, 323, 768
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 769
Bse118I	RCCGGY	2 cut(s)	206, 592
Bse1I	ACTGG	4 cut(s)	28, 204, 278, 786
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	1579
BseBI	CCWGG	2 cut(s)	325, 612
BseDI	CCNNGG	3 cut(s)	171, 323, 768
BseGI	GGATG	1 cut(s)	1469
BseJI	GATNNNNATC	1 cut(s)	1579
BseLI	CCNNNNNNNGG	2 cut(s)	213, 769
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	4 cut(s)	28, 204, 278, 786
BseRI	GAGGAG	2 cut(s)	1098, 1279
BseXI	GCAGC	2 cut(s)	594, 794
Bsh1236I	CGCG	2 cut(s)	574, 576
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	207, 243, 593
BsiWI	CGTACG	2 cut(s)	1302, 1306
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	213, 769
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	217
Bso31I	GGTCTC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	87, 895, 1372, 1574
BspACI	CCGC	2 cut(s)	572, 1271
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	2 cut(s)	574, 576
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	1582
BspTNI	GGTCTC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	206, 592
BsrI	ACTGG	4 cut(s)	28, 204, 278, 786
BssAI	RCCGGY	2 cut(s)	206, 592
BssECI	CCNNGG	3 cut(s)	171, 323, 768
BssMI	GATC	4 cut(s)	87, 895, 1372, 1574
BssNAI	GTATAC	1 cut(s)	1517
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	768
Bst1107I	GTATAC	1 cut(s)	1517
Bst2UI	CCWGG	2 cut(s)	325, 612
Bst4CI	ACNGT	3 cut(s)	628, 993, 1507
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	1302, 1306
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	4 cut(s)	84, 219, 517, 1163
BstF5I	GGATG	1 cut(s)	1469
BstFNI	CGCG	2 cut(s)	574, 576
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	4 cut(s)	90, 898, 1375, 1577
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	4 cut(s)	87, 895, 1372, 1574
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 508, 1398
BstNI	CCWGG	2 cut(s)	325, 612
BstNSI	RCATGY	2 cut(s)	56, 874
BstSCI	CCNGG	2 cut(s)	323, 610
BstSNI	TACGTA	1 cut(s)	1306
BstUI	CGCG	2 cut(s)	574, 576
BstV1I	GCAGC	2 cut(s)	594, 794
BstX2I	RGATCY	2 cut(s)	87, 1574
BstYI	RGATCY	2 cut(s)	87, 1574
BstZ17I	GTATAC	1 cut(s)	1517
BsuRI	GGCC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	439
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	1469
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 184
Cac8I	GCNNGC	1 cut(s)	868
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	2 cut(s)	206, 592
Cfr13I	GGNCC	1 cut(s)	979
CseI	GACGC	2 cut(s)	613, 938
Csp6I	GTAC	5 cut(s)	197, 293, 841, 1303, 1307
CviAII	CATG	9 cut(s)	53, 69, 256, 371, 394, 476, 871, 1278, 1520
CviQI	GTAC	5 cut(s)	197, 293, 841, 1303, 1307
DdeI	CTNAG	4 cut(s)	84, 219, 517, 1163
DpnI	GATC	4 cut(s)	89, 897, 1374, 1576
DpnII	GATC	4 cut(s)	87, 895, 1372, 1574
DraI	TTTAAA	1 cut(s)	1239
DraIII	CACNNNGTG	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco105I	TACGTA	1 cut(s)	1306
Eco130I	CCWWGG	1 cut(s)	768
Eco31I	GGTCTC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	323, 610
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	9 cut(s)	56, 72, 259, 374, 397, 479, 874, 1281, 1523
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	9 cut(s)	52, 68, 255, 370, 393, 475, 870, 1277, 1519
FauI	CCCGC	2 cut(s)	579, 1264
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	2 cut(s)	28, 1516
Fnu4HI	GCNGC	2 cut(s)	608, 808
FokI	GGATG	1 cut(s)	1476
Fsp4HI	GCNGC	2 cut(s)	608, 808
FspBI	CTAG	2 cut(s)	1014, 1425
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	2 cut(s)	608, 808
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	3 cut(s)	207, 243, 593
HgaI	GACGC	2 cut(s)	613, 938
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	9 cut(s)	56, 72, 259, 374, 397, 479, 874, 1281, 1523
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	207, 243, 593
HphI	GGTGA	1 cut(s)	1002
Hpy166II	GTNNAC	2 cut(s)	29, 1517
Hpy188I	TCNGA	4 cut(s)	50, 161, 194, 1579
Hpy188III	TCNNGA	1 cut(s)	1222
Hpy8I	GTNNAC	2 cut(s)	29, 1517
Hpy99I	CGWCG	2 cut(s)	587, 607
HpyAV	CCTTC	2 cut(s)	54, 1460
HpyCH4III	ACNGT	3 cut(s)	628, 993, 1507
HpyCH4IV	ACGT	5 cut(s)	183, 380, 1082, 1301, 1305
HpyCH4V	TGCA	5 cut(s)	68, 511, 870, 1202, 1401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 508, 1398
HpyF3I	CTNAG	4 cut(s)	84, 219, 517, 1163
HpySE526I	ACGT	5 cut(s)	183, 380, 1082, 1301, 1305
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	9 cut(s)	56, 72, 259, 374, 397, 479, 874, 1281, 1523
HspAI	GCGC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	4 cut(s)	87, 895, 1372, 1574
LmnI	GCTCC	2 cut(s)	133, 687
Lsp1109I	GCAGC	2 cut(s)	594, 794
LweI	GCATC	2 cut(s)	219, 649
MaeI	CTAG	2 cut(s)	1014, 1425
MaeII	ACGT	5 cut(s)	183, 380, 1082, 1301, 1305
MaeIII	GTNAC	4 cut(s)	4, 179, 1357, 1559
MalI	GATC	4 cut(s)	89, 897, 1374, 1576
MbiI	CCGCTC	1 cut(s)	1271
MboI	GATC	4 cut(s)	87, 895, 1372, 1574
MboII	GAAGA	7 cut(s)	327, 427, 648, 666, 697, 700, 1382
MfeI	CAATTG	1 cut(s)	1454
MflI	RGATCY	2 cut(s)	87, 1574
MlyI	GAGTC	2 cut(s)	246, 560
MslI	CAYNNNNRTG	3 cut(s)	260, 629, 1015
MspI	CCGG	3 cut(s)	207, 243, 593
MspR9I	CCNGG	2 cut(s)	325, 612
MunI	CAATTG	1 cut(s)	1454
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	2 cut(s)	325, 612
MvnI	CGCG	2 cut(s)	574, 576
MwoI	GCNNNNNNNGC	3 cut(s)	464, 508, 1398
NdeII	GATC	4 cut(s)	87, 895, 1372, 1574
NlaIII	CATG	9 cut(s)	56, 72, 259, 374, 397, 479, 874, 1281, 1523
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	2 cut(s)	56, 874
OliI	CACNNNNGTG	1 cut(s)	629
PacI	TTAATTAA	1 cut(s)	924
PciI	ACATGT	1 cut(s)	52
PctI	GAATGC	1 cut(s)	458
Pfl23II	CGTACG	2 cut(s)	1302, 1306
PkrI	GCNGC	2 cut(s)	609, 809
PleI	GAGTC	2 cut(s)	246, 559
PpsI	GAGTC	2 cut(s)	246, 559
Ppu21I	YACGTR	2 cut(s)	1302, 1306
PscI	ACATGT	1 cut(s)	52
PshBI	ATTAAT	3 cut(s)	920, 924, 1535
PsiI	TTATAA	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	323, 610
PspGI	CCWGG	2 cut(s)	323, 610
PspLI	CGTACG	2 cut(s)	1302, 1306
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	979
PsuI	RGATCY	2 cut(s)	87, 1574
RsaI	GTAC	5 cut(s)	198, 294, 842, 1304, 1308
RsaNI	GTAC	5 cut(s)	197, 293, 841, 1303, 1307
RseI	CAYNNNNRTG	3 cut(s)	260, 629, 1015
SalI	GTCGAC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	608, 808
Sau3AI	GATC	4 cut(s)	87, 895, 1372, 1574
Sau96I	GGNCC	1 cut(s)	979
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	2 cut(s)	246, 560
ScrFI	CCNGG	2 cut(s)	325, 612
SfaNI	GCATC	2 cut(s)	219, 649
SinI	GGWCC	1 cut(s)	979
SmiMI	CAYNNNNRTG	3 cut(s)	260, 629, 1015
SnaBI	TACGTA	1 cut(s)	1306
SsiI	CCGC	2 cut(s)	572, 1271
SspI	AATATT	2 cut(s)	1041, 1539
SspMI	CTAG	2 cut(s)	1014, 1425
StyD4I	CCNGG	2 cut(s)	323, 610
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	628, 993, 1507
TaiI	ACGT	5 cut(s)	186, 383, 1085, 1304, 1308
TaqI	TCGA	5 cut(s)	20, 28, 234, 597, 602
TaqII	GACCGA	1 cut(s)	163
TatI	WGTACW	2 cut(s)	196, 840
TscAI	CASTG	2 cut(s)	132, 184
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	607, 807
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	90, 387, 1122, 1187, 1383
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	132, 184
VpaK11BI	GGWCC	1 cut(s)	979
VspI	ATTAAT	3 cut(s)	920, 924, 1535
XapI	RAATTY	8 cut(s)	44, 141, 163, 484, 813, 970, 984, 1285
XceI	RCATGY	2 cut(s)	56, 874
XmiI	GTMKAC	2 cut(s)	28, 1516
XspI	CTAG	2 cut(s)	1014, 1425
ZraI	GACGTC	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.