Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2389214 .. 2390908

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAATTCCTTAAAAAAATGATCATAAGTATCAACTTATTTAATAATATTCTAAATTTTCAACCTCGTTATGGTTTAAATTTGAATAAAATAAGTATTGGACCCCCAACTATGAGCAAATTGCATTCGCGAGGAGGATCAACTATTAAAATAACCATCCGAAAAGAAACACAACCACTTATCCAATCCTTAAATTTATTTATTTTATTATCAATAATTATCTCTTCAATGATAAGATTTATTATAAAAATAAAATTTCTTTCTAATTATCATCTTGATTATTTCTTTTTATTTTTTTTAGATTTTATTTTCAATTTTATAATCAACCTATATCACAAGTTAATTGCATTTATCTACCTATATGACATATTATTTTTTAAAATCAACCTGTCACAGATTAATGTGTCTTGTTTGTATGTGTTTTTTCTACCTTTTAATTCGTTACTTGAGTTAGGCTATAATGTTTTGCTTTATTTTTTTAGAGTCGAAAAATATTCTTTGTTTTTTTTACTTAGATCTAAAAATCCCATAAATAAAACCACGTGTAACAACACCTTCCACAGGAGGAAAACGCTCTGTAGACTTGGGAGTCCAGAGTTTCACAGAATCACATTCGCTCGACGAGCGAATTATCGTGAAGAGCTCTGCAACTCCCGAAATTTCATATTTCCGCCGAGTTCCAAGGTCCCCACCAGCAAAACAATGGCTTCCATGTTCTTCTTTGGAACTTTTTCAACACCTTTACAGGGGTTTTCTCAAACAAAAGCAAAAACAAGCTCGAATTCTTCAGCTTCATGCCCTCCCATGGCGTGCTGGATCAAATCCTCACTTGGGTCTTCGCAATCAGCACTTTTCCGAAACGGGTTGTCTTTGGAATCGGAAAATTTTAATGGGGTTTTGTTCAAATCTCGGTCTTTGAGTGTTTATGCAAGAGCAGCTACAGAGAAAAGTCTTTATGATTTCACTGTCAAGGTATTGATGCTAAGGATGTTCCTCTTAGCAAGTTCAAGGGGAAGGTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

342

Amino Acids

39.61

Weight (kDa)

10.25

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	245, 320
AasI	GACNNNNNNGTC	1 cut(s)	588
AccI	GTMKAC	1 cut(s)	580
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	671
AclWI	GGATC	2 cut(s)	145, 824
AcsI	RAATTY	8 cut(s)	5, 55, 79, 193, 254, 658, 781, 883
AcuI	CTGAAG	1 cut(s)	771
AcvI	CACGTG	1 cut(s)	543
AfiI	CCNNNNNNNGG	5 cut(s)	71, 561, 746, 805, 831
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	7 cut(s)	62, 85, 228, 313, 735, 904, 1008
AluBI	AGCT	4 cut(s)	643, 777, 791, 938
AluI	AGCT	4 cut(s)	643, 777, 791, 938
Alw21I	GWGCWC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	145, 824
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	8 cut(s)	5, 55, 79, 193, 254, 658, 781, 883
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	730
AspS9I	GGNCC	2 cut(s)	101, 685
AvaII	GGWCC	2 cut(s)	101, 685
BanII	GRGCYC	1 cut(s)	645
BbrPI	CACGTG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	947
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	577, 939
BglII	AGATCT	1 cut(s)	515
BisI	GCNGC	1 cut(s)	936
BlsI	GCNGC	1 cut(s)	937
Bme18I	GGWCC	2 cut(s)	101, 685
BmgT120I	GGNCC	2 cut(s)	101, 685
BmiI	GGNNCC	2 cut(s)	103, 687
BmsI	GCATC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	681, 804
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 561, 746, 805, 831
BseDI	CCNNGG	2 cut(s)	681, 804
BseGI	GGATG	2 cut(s)	156, 993
BseLI	CCNNNNNNNGG	5 cut(s)	71, 561, 746, 805, 831
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	947
Bsh1236I	CGCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	5 cut(s)	71, 561, 746, 805, 831
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	4 cut(s)	21, 137, 515, 816
Bsp19I	CCATGG	1 cut(s)	804
Bsp68I	TCGCGA	1 cut(s)	130
BspACI	CCGC	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	103, 687
BspPI	GGATC	2 cut(s)	145, 824
BspQI	GCTCTTC	1 cut(s)	633
BssECI	CCNNGG	2 cut(s)	681, 804
BssMI	GATC	4 cut(s)	21, 137, 515, 816
BssT1I	CCWWGG	2 cut(s)	681, 804
Bst4CI	ACNGT	1 cut(s)	967
Bst6I	CTCTTC	2 cut(s)	229, 633
BstBAI	YACGTR	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	3 cut(s)	512, 983, 997
BstDSI	CCRYGG	1 cut(s)	804
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	156, 993
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	24, 140, 518, 819
BstMBI	GATC	4 cut(s)	21, 137, 515, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 935
BstSFI	CTRYAG	2 cut(s)	577, 939
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	947
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	156, 993
BtsIMutI	CAGTG	1 cut(s)	963
BtuMI	TCGCGA	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	811
Cfr13I	GGNCC	2 cut(s)	101, 685
CviAII	CATG	3 cut(s)	712, 795, 805
CviJI	RGCY	6 cut(s)	456, 643, 707, 777, 791, 938
CviKI_1	RGCY	6 cut(s)	456, 643, 707, 777, 791, 938
DdeI	CTNAG	3 cut(s)	512, 983, 997
DpnI	GATC	4 cut(s)	23, 139, 517, 818
DpnII	GATC	4 cut(s)	21, 137, 515, 816
DraI	TTTAAA	2 cut(s)	78, 379
DrdI	GACNNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	229, 633
EarI	CTCTTC	2 cut(s)	229, 633
EciI	GGCGGA	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	681, 804
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	2 cut(s)	101, 685
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	771
Eco72I	CACGTG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	681, 804
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	2 cut(s)	681, 804
FaeI	CATG	3 cut(s)	715, 798, 808
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	3 cut(s)	711, 794, 804
FbaI	TGATCA	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	936
FokI	GGATG	2 cut(s)	143, 1000
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	1 cut(s)	936
GluI	GCNGC	1 cut(s)	936
Hin1II	CATG	3 cut(s)	715, 798, 808
HinfI	GANTC	4 cut(s)	483, 589, 606, 875
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	3 cut(s)	161, 857, 880
Hpy188III	TCNNGA	5 cut(s)	129, 275, 593, 635, 654
Hpy8I	GTNNAC	1 cut(s)	581
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	2 cut(s)	565, 1008
HpyCH4III	ACNGT	1 cut(s)	967
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	4 cut(s)	124, 347, 648, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 935
HpyF3I	CTNAG	3 cut(s)	512, 983, 997
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	3 cut(s)	715, 798, 808
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	21, 137, 515, 816
LguI	GCTCTTC	1 cut(s)	633
LpnPI	CCDG	6 cut(s)	401, 547, 606, 706, 731, 799
Lsp1109I	GCAGC	1 cut(s)	947
LweI	GCATC	1 cut(s)	969
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	390, 441, 545
MalI	GATC	4 cut(s)	23, 139, 517, 818
MboI	GATC	4 cut(s)	21, 137, 515, 816
MboII	GAAGA	5 cut(s)	216, 650, 709, 777, 828
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	492, 598
MnlI	CCTC	7 cut(s)	75, 125, 128, 558, 810, 835, 1004
MroXI	GAANNNNTTC	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	124
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	623, 935
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	4 cut(s)	21, 137, 515, 816
NlaIII	CATG	3 cut(s)	715, 798, 808
NlaIV	GGNNCC	2 cut(s)	103, 687
NmeAIII	GCCGAG	1 cut(s)	699
NmuCI	GTSAC	1 cut(s)	390
NruI	TCGCGA	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	606, 875
PkrI	GCNGC	1 cut(s)	937
PleI	GAGTC	2 cut(s)	491, 597
PmaCI	CACGTG	1 cut(s)	543
PmlI	CACGTG	1 cut(s)	543
PpsI	GAGTC	2 cut(s)	491, 597
Ppu21I	YACGTR	1 cut(s)	543
PpuMI	RGGWCCY	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	2 cut(s)	245, 320
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	685
PspCI	CACGTG	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	103, 687
PspPI	GGNCC	2 cut(s)	101, 685
PspPPI	RGGWCCY	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	515
RruI	TCGCGA	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	633
SatI	GCNGC	1 cut(s)	936
Sau3AI	GATC	4 cut(s)	21, 137, 515, 816
Sau96I	GGNCC	2 cut(s)	101, 685
SchI	GAGTC	2 cut(s)	492, 598
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	1 cut(s)	969
SfcI	CTRYAG	2 cut(s)	577, 939
SinI	GGWCC	2 cut(s)	101, 685
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SsiI	CCGC	1 cut(s)	671
SspI	AATATT	2 cut(s)	49, 494
SstI	GAGCTC	1 cut(s)	645
StyI	CCWWGG	2 cut(s)	681, 804
TaaI	ACNGT	1 cut(s)	967
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	486, 619, 779
TaqII	GACCGA	1 cut(s)	900
TfiI	GAWTC	2 cut(s)	606, 875
TscAI	CASTG	1 cut(s)	970
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	17, 652, 783
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	101, 685
VspI	ATTAAT	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	559
XapI	RAATTY	8 cut(s)	5, 55, 79, 193, 254, 658, 781, 883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.